Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3397

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3396 and EX28DRAFT_3397 are separated by 176 nucleotidesEX28DRAFT_3397 and EX28DRAFT_3398 are separated by 85 nucleotides EX28DRAFT_3396: EX28DRAFT_3396 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 64,201 to 65,244 _3396 EX28DRAFT_3397: EX28DRAFT_3397 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 65,421 to 67,319 _3397 EX28DRAFT_3398: EX28DRAFT_3398 - Predicted nucleoside-diphosphate-sugar epimerases, at 67,405 to 68,253 _3398 Position (kb) 65 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2 3at 64.497 kb on + strand, within EX28DRAFT_3396at 64.562 kb on + strand, within EX28DRAFT_3396at 64.627 kb on - strand, within EX28DRAFT_3396at 64.701 kb on + strand, within EX28DRAFT_3396at 64.702 kb on - strand, within EX28DRAFT_3396at 64.952 kb on + strand, within EX28DRAFT_3396at 64.952 kb on + strand, within EX28DRAFT_3396at 64.952 kb on + strand, within EX28DRAFT_3396at 64.956 kb on + strand, within EX28DRAFT_3396at 64.956 kb on + strand, within EX28DRAFT_3396at 64.986 kb on + strand, within EX28DRAFT_3396at 64.987 kb on - strand, within EX28DRAFT_3396at 64.987 kb on - strand, within EX28DRAFT_3396at 64.987 kb on - strand, within EX28DRAFT_3396at 65.004 kb on + strand, within EX28DRAFT_3396at 65.005 kb on - strand, within EX28DRAFT_3396at 65.039 kb on - strand, within EX28DRAFT_3396at 65.050 kb on - strand, within EX28DRAFT_3396at 65.064 kb on + strand, within EX28DRAFT_3396at 65.065 kb on - strand, within EX28DRAFT_3396at 65.144 kb on - strandat 65.148 kb on - strandat 65.148 kb on - strandat 65.151 kb on + strandat 65.227 kb on + strandat 65.253 kb on - strandat 65.359 kb on + strandat 65.378 kb on - strandat 65.437 kb on + strandat 65.475 kb on - strandat 65.617 kb on + strand, within EX28DRAFT_3397at 65.676 kb on - strand, within EX28DRAFT_3397at 65.788 kb on + strand, within EX28DRAFT_3397at 65.789 kb on - strand, within EX28DRAFT_3397at 65.846 kb on + strand, within EX28DRAFT_3397at 65.847 kb on - strand, within EX28DRAFT_3397at 66.040 kb on + strand, within EX28DRAFT_3397at 66.041 kb on - strand, within EX28DRAFT_3397at 66.213 kb on + strand, within EX28DRAFT_3397at 66.213 kb on + strand, within EX28DRAFT_3397at 66.214 kb on - strand, within EX28DRAFT_3397at 66.214 kb on - strand, within EX28DRAFT_3397at 66.273 kb on + strand, within EX28DRAFT_3397at 66.275 kb on + strand, within EX28DRAFT_3397at 66.413 kb on + strand, within EX28DRAFT_3397at 66.413 kb on + strand, within EX28DRAFT_3397at 66.413 kb on + strand, within EX28DRAFT_3397at 66.507 kb on + strand, within EX28DRAFT_3397at 66.507 kb on + strand, within EX28DRAFT_3397at 66.508 kb on - strand, within EX28DRAFT_3397at 66.608 kb on + strand, within EX28DRAFT_3397at 66.633 kb on + strand, within EX28DRAFT_3397at 66.633 kb on + strand, within EX28DRAFT_3397at 66.634 kb on - strand, within EX28DRAFT_3397at 66.634 kb on - strand, within EX28DRAFT_3397at 66.889 kb on - strand, within EX28DRAFT_3397at 66.893 kb on + strand, within EX28DRAFT_3397at 67.007 kb on + strand, within EX28DRAFT_3397at 67.008 kb on - strand, within EX28DRAFT_3397at 67.010 kb on + strand, within EX28DRAFT_3397at 67.011 kb on - strand, within EX28DRAFT_3397at 67.034 kb on + strand, within EX28DRAFT_3397at 67.035 kb on - strand, within EX28DRAFT_3397at 67.035 kb on - strand, within EX28DRAFT_3397at 67.067 kb on + strand, within EX28DRAFT_3397at 67.236 kb on - strandat 67.236 kb on - strandat 67.260 kb on - strandat 67.325 kb on - strandat 67.325 kb on - strandat 67.326 kb on + strandat 67.327 kb on - strandat 67.327 kb on - strandat 67.346 kb on - strandat 67.420 kb on - strandat 67.440 kb on + strandat 67.441 kb on - strandat 67.528 kb on - strand, within EX28DRAFT_3398at 67.528 kb on - strand, within EX28DRAFT_3398at 67.598 kb on + strand, within EX28DRAFT_3398at 67.733 kb on + strand, within EX28DRAFT_3398at 67.835 kb on + strand, within EX28DRAFT_3398at 67.835 kb on + strand, within EX28DRAFT_3398at 67.835 kb on + strand, within EX28DRAFT_3398at 68.158 kb on + strand, within EX28DRAFT_3398at 68.159 kb on - strand, within EX28DRAFT_3398at 68.293 kb on + strandat 68.293 kb on + strandat 68.293 kb on + strandat 68.294 kb on - strandat 68.294 kb on - strandat 68.294 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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64,497 + EX28DRAFT_3396 0.28 -0.3
64,562 + EX28DRAFT_3396 0.35 +0.0
64,627 - EX28DRAFT_3396 0.41 -0.5
64,701 + EX28DRAFT_3396 0.48 +3.0
64,702 - EX28DRAFT_3396 0.48 +0.1
64,952 + EX28DRAFT_3396 0.72 +0.9
64,952 + EX28DRAFT_3396 0.72 -0.4
64,952 + EX28DRAFT_3396 0.72 -0.3
64,956 + EX28DRAFT_3396 0.72 +0.4
64,956 + EX28DRAFT_3396 0.72 +2.0
64,986 + EX28DRAFT_3396 0.75 +2.0
64,987 - EX28DRAFT_3396 0.75 +1.0
64,987 - EX28DRAFT_3396 0.75 +0.5
64,987 - EX28DRAFT_3396 0.75 -0.9
65,004 + EX28DRAFT_3396 0.77 -1.0
65,005 - EX28DRAFT_3396 0.77 -0.4
65,039 - EX28DRAFT_3396 0.80 -0.2
65,050 - EX28DRAFT_3396 0.81 -1.2
65,064 + EX28DRAFT_3396 0.83 +0.6
65,065 - EX28DRAFT_3396 0.83 -0.3
65,144 - +0.2
65,148 - +0.2
65,148 - +0.1
65,151 + +0.1
65,227 + +0.8
65,253 - +0.3
65,359 + +0.2
65,378 - +0.5
65,437 + -0.5
65,475 - -0.7
65,617 + EX28DRAFT_3397 0.10 +0.1
65,676 - EX28DRAFT_3397 0.13 +2.0
65,788 + EX28DRAFT_3397 0.19 +0.5
65,789 - EX28DRAFT_3397 0.19 +0.0
65,846 + EX28DRAFT_3397 0.22 -0.0
65,847 - EX28DRAFT_3397 0.22 +1.7
66,040 + EX28DRAFT_3397 0.33 +0.0
66,041 - EX28DRAFT_3397 0.33 -0.3
66,213 + EX28DRAFT_3397 0.42 +0.5
66,213 + EX28DRAFT_3397 0.42 -1.3
66,214 - EX28DRAFT_3397 0.42 -0.3
66,214 - EX28DRAFT_3397 0.42 +0.1
66,273 + EX28DRAFT_3397 0.45 -0.4
66,275 + EX28DRAFT_3397 0.45 +0.4
66,413 + EX28DRAFT_3397 0.52 +0.3
66,413 + EX28DRAFT_3397 0.52 +0.1
66,413 + EX28DRAFT_3397 0.52 +0.4
66,507 + EX28DRAFT_3397 0.57 -0.2
66,507 + EX28DRAFT_3397 0.57 -0.5
66,508 - EX28DRAFT_3397 0.57 +0.2
66,608 + EX28DRAFT_3397 0.63 -0.2
66,633 + EX28DRAFT_3397 0.64 +0.0
66,633 + EX28DRAFT_3397 0.64 -0.2
66,634 - EX28DRAFT_3397 0.64 +2.0
66,634 - EX28DRAFT_3397 0.64 -0.5
66,889 - EX28DRAFT_3397 0.77 +0.8
66,893 + EX28DRAFT_3397 0.78 +0.1
67,007 + EX28DRAFT_3397 0.84 +1.3
67,008 - EX28DRAFT_3397 0.84 -0.4
67,010 + EX28DRAFT_3397 0.84 -0.6
67,011 - EX28DRAFT_3397 0.84 +0.1
67,034 + EX28DRAFT_3397 0.85 +0.4
67,035 - EX28DRAFT_3397 0.85 +0.1
67,035 - EX28DRAFT_3397 0.85 +0.4
67,067 + EX28DRAFT_3397 0.87 +1.0
67,236 - -0.1
67,236 - -0.8
67,260 - +0.2
67,325 - +0.7
67,325 - -0.2
67,326 + +0.3
67,327 - +0.8
67,327 - -0.6
67,346 - -0.1
67,420 - +1.2
67,440 + +0.3
67,441 - +0.1
67,528 - EX28DRAFT_3398 0.14 -0.1
67,528 - EX28DRAFT_3398 0.14 -0.3
67,598 + EX28DRAFT_3398 0.23 +0.4
67,733 + EX28DRAFT_3398 0.39 -1.1
67,835 + EX28DRAFT_3398 0.51 +0.1
67,835 + EX28DRAFT_3398 0.51 -0.6
67,835 + EX28DRAFT_3398 0.51 +0.4
68,158 + EX28DRAFT_3398 0.89 -0.0
68,159 - EX28DRAFT_3398 0.89 +0.0
68,293 + -1.8
68,293 + -0.0
68,293 + +0.6
68,294 - -1.1
68,294 - +0.0
68,294 - -0.6

Or see this region's nucleotide sequence