Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3059

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3058 and EX28DRAFT_3059 are separated by 104 nucleotidesEX28DRAFT_3059 and EX28DRAFT_3060 are separated by 31 nucleotidesEX28DRAFT_3060 and EX28DRAFT_3061 are separated by 141 nucleotidesEX28DRAFT_3061 and EX28DRAFT_3062 are separated by 17 nucleotides EX28DRAFT_3058: EX28DRAFT_3058 - Signal transduction histidine kinase, at 368,185 to 369,534 _3058 EX28DRAFT_3059: EX28DRAFT_3059 - Putative NADPH-quinone reductase (modulator of drug activity B), at 369,639 to 370,220 _3059 EX28DRAFT_3060: EX28DRAFT_3060 - Uncharacterized conserved protein, at 370,252 to 370,566 _3060 EX28DRAFT_3061: EX28DRAFT_3061 - BON domain/LysM domain, at 370,708 to 371,148 _3061 EX28DRAFT_3062: EX28DRAFT_3062 - transcriptional regulator, RpiR family, at 371,166 to 372,053 _3062 Position (kb) 369 370 371Strain fitness (log2 ratio) -2 -1 0 1at 369.020 kb on + strand, within EX28DRAFT_3058at 369.020 kb on + strand, within EX28DRAFT_3058at 369.132 kb on - strand, within EX28DRAFT_3058at 369.615 kb on + strandat 369.637 kb on + strandat 369.686 kb on + strandat 369.686 kb on + strandat 369.780 kb on + strand, within EX28DRAFT_3059at 369.824 kb on - strand, within EX28DRAFT_3059at 369.824 kb on - strand, within EX28DRAFT_3059at 369.871 kb on + strand, within EX28DRAFT_3059at 369.879 kb on + strand, within EX28DRAFT_3059at 369.880 kb on - strand, within EX28DRAFT_3059at 369.918 kb on + strand, within EX28DRAFT_3059at 369.993 kb on + strand, within EX28DRAFT_3059at 369.995 kb on + strand, within EX28DRAFT_3059at 369.995 kb on + strand, within EX28DRAFT_3059at 370.176 kb on + strandat 370.177 kb on - strandat 370.177 kb on - strandat 370.188 kb on + strandat 370.219 kb on - strandat 370.219 kb on - strandat 370.245 kb on - strandat 370.564 kb on + strandat 370.656 kb on + strandat 370.671 kb on - strandat 370.671 kb on - strandat 370.676 kb on + strandat 370.677 kb on - strandat 370.677 kb on - strandat 370.749 kb on - strandat 370.749 kb on - strandat 370.756 kb on - strand, within EX28DRAFT_3061at 370.770 kb on + strand, within EX28DRAFT_3061at 370.815 kb on + strand, within EX28DRAFT_3061at 370.815 kb on + strand, within EX28DRAFT_3061at 370.831 kb on - strand, within EX28DRAFT_3061at 370.831 kb on - strand, within EX28DRAFT_3061at 370.842 kb on + strand, within EX28DRAFT_3061at 370.990 kb on + strand, within EX28DRAFT_3061at 370.990 kb on + strand, within EX28DRAFT_3061at 370.990 kb on + strand, within EX28DRAFT_3061at 370.993 kb on + strand, within EX28DRAFT_3061at 370.993 kb on + strand, within EX28DRAFT_3061at 371.025 kb on + strand, within EX28DRAFT_3061at 371.042 kb on - strand, within EX28DRAFT_3061at 371.059 kb on + strand, within EX28DRAFT_3061at 371.060 kb on - strand, within EX28DRAFT_3061at 371.065 kb on - strand, within EX28DRAFT_3061at 371.134 kb on - strandat 371.203 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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369,020 + EX28DRAFT_3058 0.62 -2.1
369,020 + EX28DRAFT_3058 0.62 -0.4
369,132 - EX28DRAFT_3058 0.70 -0.7
369,615 + +0.3
369,637 + -1.0
369,686 + +0.9
369,686 + -0.5
369,780 + EX28DRAFT_3059 0.24 -0.4
369,824 - EX28DRAFT_3059 0.32 -1.4
369,824 - EX28DRAFT_3059 0.32 +0.5
369,871 + EX28DRAFT_3059 0.40 +0.1
369,879 + EX28DRAFT_3059 0.41 +0.0
369,880 - EX28DRAFT_3059 0.41 -0.8
369,918 + EX28DRAFT_3059 0.48 -0.8
369,993 + EX28DRAFT_3059 0.61 +0.4
369,995 + EX28DRAFT_3059 0.61 -0.0
369,995 + EX28DRAFT_3059 0.61 -0.6
370,176 + +1.4
370,177 - +1.6
370,177 - -2.2
370,188 + -0.1
370,219 - +0.0
370,219 - -0.2
370,245 - +0.3
370,564 + -0.1
370,656 + +0.4
370,671 - +0.6
370,671 - +0.3
370,676 + +0.0
370,677 - -0.6
370,677 - +0.4
370,749 - -0.1
370,749 - +0.5
370,756 - EX28DRAFT_3061 0.11 -0.3
370,770 + EX28DRAFT_3061 0.14 -0.7
370,815 + EX28DRAFT_3061 0.24 -0.1
370,815 + EX28DRAFT_3061 0.24 +0.4
370,831 - EX28DRAFT_3061 0.28 -0.0
370,831 - EX28DRAFT_3061 0.28 -0.1
370,842 + EX28DRAFT_3061 0.30 -0.0
370,990 + EX28DRAFT_3061 0.64 -0.2
370,990 + EX28DRAFT_3061 0.64 -0.2
370,990 + EX28DRAFT_3061 0.64 -0.5
370,993 + EX28DRAFT_3061 0.65 +0.1
370,993 + EX28DRAFT_3061 0.65 +1.3
371,025 + EX28DRAFT_3061 0.72 +0.3
371,042 - EX28DRAFT_3061 0.76 +0.2
371,059 + EX28DRAFT_3061 0.80 -1.1
371,060 - EX28DRAFT_3061 0.80 -1.3
371,065 - EX28DRAFT_3061 0.81 -1.4
371,134 - +0.0
371,203 - -0.0

Or see this region's nucleotide sequence