Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2764 and EX28DRAFT_2765 are separated by 9 nucleotides EX28DRAFT_2765 and EX28DRAFT_2766 are separated by 191 nucleotides
EX28DRAFT_2764: EX28DRAFT_2764 - ABC-type proline/glycine betaine transport system, permease component, at 71,422 to 72,492
_2764
EX28DRAFT_2765: EX28DRAFT_2765 - ABC-type proline/glycine betaine transport systems, periplasmic components, at 72,502 to 73,497
_2765
EX28DRAFT_2766: EX28DRAFT_2766 - Arabinose efflux permease, at 73,689 to 74,873
_2766
Position (kb) 72
73
74 Strain fitness (log2 ratio) -1
0
1 at 71.596 kb on - strand, within EX28DRAFT_2764 at 71.695 kb on + strand, within EX28DRAFT_2764 at 71.695 kb on + strand, within EX28DRAFT_2764 at 71.695 kb on + strand, within EX28DRAFT_2764 at 71.695 kb on + strand, within EX28DRAFT_2764 at 71.959 kb on - strand, within EX28DRAFT_2764 at 72.005 kb on - strand, within EX28DRAFT_2764 at 72.066 kb on + strand, within EX28DRAFT_2764 at 72.067 kb on - strand, within EX28DRAFT_2764 at 72.067 kb on - strand, within EX28DRAFT_2764 at 72.491 kb on - strand at 72.510 kb on + strand at 72.510 kb on + strand at 72.510 kb on + strand at 72.510 kb on + strand at 72.510 kb on + strand at 72.510 kb on + strand at 72.511 kb on - strand at 72.511 kb on - strand at 72.511 kb on - strand at 72.708 kb on - strand, within EX28DRAFT_2765 at 72.708 kb on - strand, within EX28DRAFT_2765 at 72.781 kb on + strand, within EX28DRAFT_2765 at 72.782 kb on - strand, within EX28DRAFT_2765 at 72.782 kb on - strand, within EX28DRAFT_2765 at 73.060 kb on + strand, within EX28DRAFT_2765 at 73.061 kb on - strand, within EX28DRAFT_2765 at 73.117 kb on + strand, within EX28DRAFT_2765 at 73.118 kb on - strand, within EX28DRAFT_2765 at 73.118 kb on - strand, within EX28DRAFT_2765 at 73.121 kb on - strand, within EX28DRAFT_2765 at 73.279 kb on - strand, within EX28DRAFT_2765 at 73.556 kb on - strand at 73.599 kb on + strand at 73.599 kb on + strand at 73.599 kb on + strand at 73.600 kb on - strand at 73.600 kb on - strand at 73.600 kb on - strand at 73.600 kb on - strand at 73.642 kb on + strand at 73.687 kb on + strand at 73.687 kb on + strand at 73.688 kb on - strand at 73.732 kb on + strand at 73.733 kb on - strand at 73.771 kb on - strand at 73.901 kb on + strand, within EX28DRAFT_2766 at 73.902 kb on - strand, within EX28DRAFT_2766 at 74.185 kb on + strand, within EX28DRAFT_2766 at 74.185 kb on + strand, within EX28DRAFT_2766 at 74.188 kb on - strand, within EX28DRAFT_2766 at 74.275 kb on - strand, within EX28DRAFT_2766 at 74.421 kb on + strand, within EX28DRAFT_2766 at 74.422 kb on - strand, within EX28DRAFT_2766
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 71,596 - EX28DRAFT_2764 0.16 -0.6 71,695 + EX28DRAFT_2764 0.25 +0.1 71,695 + EX28DRAFT_2764 0.25 +0.5 71,695 + EX28DRAFT_2764 0.25 -0.7 71,695 + EX28DRAFT_2764 0.25 -0.4 71,959 - EX28DRAFT_2764 0.50 +0.4 72,005 - EX28DRAFT_2764 0.54 +0.1 72,066 + EX28DRAFT_2764 0.60 -0.4 72,067 - EX28DRAFT_2764 0.60 +0.8 72,067 - EX28DRAFT_2764 0.60 -1.2 72,491 - -0.9 72,510 + -0.5 72,510 + -0.3 72,510 + -0.4 72,510 + +0.2 72,510 + +0.1 72,510 + -0.9 72,511 - +0.4 72,511 - +1.0 72,511 - -0.1 72,708 - EX28DRAFT_2765 0.21 -0.7 72,708 - EX28DRAFT_2765 0.21 -0.8 72,781 + EX28DRAFT_2765 0.28 -0.1 72,782 - EX28DRAFT_2765 0.28 -1.1 72,782 - EX28DRAFT_2765 0.28 +0.2 73,060 + EX28DRAFT_2765 0.56 +0.1 73,061 - EX28DRAFT_2765 0.56 -1.0 73,117 + EX28DRAFT_2765 0.62 +0.0 73,118 - EX28DRAFT_2765 0.62 -1.1 73,118 - EX28DRAFT_2765 0.62 +0.8 73,121 - EX28DRAFT_2765 0.62 -1.1 73,279 - EX28DRAFT_2765 0.78 -1.5 73,556 - +0.9 73,599 + -0.1 73,599 + -0.5 73,599 + -1.1 73,600 - -0.0 73,600 - -0.0 73,600 - +0.2 73,600 - +1.2 73,642 + -0.4 73,687 + -0.4 73,687 + -1.2 73,688 - -0.1 73,732 + -0.3 73,733 - -0.9 73,771 - +0.2 73,901 + EX28DRAFT_2766 0.18 +1.1 73,902 - EX28DRAFT_2766 0.18 +0.6 74,185 + EX28DRAFT_2766 0.42 -0.1 74,185 + EX28DRAFT_2766 0.42 +0.1 74,188 - EX28DRAFT_2766 0.42 +0.0 74,275 - EX28DRAFT_2766 0.49 +0.2 74,421 + EX28DRAFT_2766 0.62 +0.1 74,422 - EX28DRAFT_2766 0.62 +0.3
Or see this region's nucleotide sequence