Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2618 and EX28DRAFT_2619 are separated by 17 nucleotides EX28DRAFT_2619 and EX28DRAFT_2620 are separated by 63 nucleotides
EX28DRAFT_2618: EX28DRAFT_2618 - Uncharacterized protein conserved in bacteria, at 2,656,549 to 2,657,043
_2618
EX28DRAFT_2619: EX28DRAFT_2619 - diguanylate cyclase (GGDEF) domain, at 2,657,061 to 2,658,992
_2619
EX28DRAFT_2620: EX28DRAFT_2620 - Chloramphenicol O-acetyltransferase, at 2,659,056 to 2,659,733
_2620
Position (kb)
2657
2658
2659 Strain fitness (log2 ratio)
-1
0
1 at 2656.294 kb on + strand at 2656.303 kb on + strand at 2656.487 kb on + strand at 2656.572 kb on - strand at 2656.747 kb on + strand, within EX28DRAFT_2618 at 2656.818 kb on + strand, within EX28DRAFT_2618 at 2656.818 kb on + strand, within EX28DRAFT_2618 at 2656.819 kb on - strand, within EX28DRAFT_2618 at 2656.819 kb on - strand, within EX28DRAFT_2618 at 2656.875 kb on + strand, within EX28DRAFT_2618 at 2657.060 kb on - strand at 2657.112 kb on + strand at 2657.113 kb on - strand at 2657.206 kb on - strand at 2657.259 kb on - strand, within EX28DRAFT_2619 at 2657.291 kb on + strand, within EX28DRAFT_2619 at 2657.329 kb on + strand, within EX28DRAFT_2619 at 2657.329 kb on + strand, within EX28DRAFT_2619 at 2657.562 kb on - strand, within EX28DRAFT_2619 at 2657.597 kb on - strand, within EX28DRAFT_2619 at 2657.845 kb on + strand, within EX28DRAFT_2619 at 2657.883 kb on + strand, within EX28DRAFT_2619 at 2657.884 kb on - strand, within EX28DRAFT_2619 at 2657.921 kb on - strand, within EX28DRAFT_2619 at 2658.069 kb on - strand, within EX28DRAFT_2619 at 2658.069 kb on - strand, within EX28DRAFT_2619 at 2658.089 kb on - strand, within EX28DRAFT_2619 at 2658.115 kb on + strand, within EX28DRAFT_2619 at 2658.116 kb on - strand, within EX28DRAFT_2619 at 2658.175 kb on - strand, within EX28DRAFT_2619 at 2658.306 kb on + strand, within EX28DRAFT_2619 at 2658.342 kb on + strand, within EX28DRAFT_2619 at 2658.407 kb on + strand, within EX28DRAFT_2619 at 2658.562 kb on + strand, within EX28DRAFT_2619 at 2658.563 kb on - strand, within EX28DRAFT_2619 at 2658.563 kb on - strand, within EX28DRAFT_2619 at 2658.824 kb on + strand at 2658.980 kb on + strand at 2658.984 kb on + strand at 2659.197 kb on - strand, within EX28DRAFT_2620 at 2659.232 kb on + strand, within EX28DRAFT_2620 at 2659.306 kb on + strand, within EX28DRAFT_2620 at 2659.329 kb on + strand, within EX28DRAFT_2620 at 2659.330 kb on - strand, within EX28DRAFT_2620 at 2659.413 kb on + strand, within EX28DRAFT_2620 at 2659.414 kb on - strand, within EX28DRAFT_2620 at 2659.414 kb on - strand, within EX28DRAFT_2620 at 2659.414 kb on - strand, within EX28DRAFT_2620 at 2659.414 kb on - strand, within EX28DRAFT_2620 at 2659.452 kb on + strand, within EX28DRAFT_2620 at 2659.499 kb on + strand, within EX28DRAFT_2620 at 2659.500 kb on - strand, within EX28DRAFT_2620 at 2659.518 kb on - strand, within EX28DRAFT_2620 at 2659.526 kb on + strand, within EX28DRAFT_2620 at 2659.527 kb on - strand, within EX28DRAFT_2620 at 2659.529 kb on + strand, within EX28DRAFT_2620 at 2659.630 kb on + strand, within EX28DRAFT_2620 at 2659.631 kb on - strand, within EX28DRAFT_2620 at 2659.631 kb on - strand, within EX28DRAFT_2620 at 2659.674 kb on - strand at 2659.702 kb on + strand at 2659.724 kb on + strand at 2659.725 kb on - strand at 2659.778 kb on + strand at 2659.816 kb on + strand at 2659.817 kb on - strand at 2659.977 kb on + strand at 2659.978 kb on - strand at 2659.978 kb on - strand at 2659.978 kb on - strand at 2659.980 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,656,294 + +0.2 2,656,303 + +0.0 2,656,487 + +0.1 2,656,572 - +0.3 2,656,747 + EX28DRAFT_2618 0.40 -0.5 2,656,818 + EX28DRAFT_2618 0.54 +0.5 2,656,818 + EX28DRAFT_2618 0.54 -0.3 2,656,819 - EX28DRAFT_2618 0.55 -1.5 2,656,819 - EX28DRAFT_2618 0.55 +0.1 2,656,875 + EX28DRAFT_2618 0.66 +1.0 2,657,060 - -0.3 2,657,112 + +0.0 2,657,113 - -0.4 2,657,206 - +0.1 2,657,259 - EX28DRAFT_2619 0.10 -1.6 2,657,291 + EX28DRAFT_2619 0.12 -0.0 2,657,329 + EX28DRAFT_2619 0.14 -0.3 2,657,329 + EX28DRAFT_2619 0.14 -0.2 2,657,562 - EX28DRAFT_2619 0.26 +0.2 2,657,597 - EX28DRAFT_2619 0.28 -0.5 2,657,845 + EX28DRAFT_2619 0.41 -0.1 2,657,883 + EX28DRAFT_2619 0.43 +0.3 2,657,884 - EX28DRAFT_2619 0.43 -0.3 2,657,921 - EX28DRAFT_2619 0.45 +0.1 2,658,069 - EX28DRAFT_2619 0.52 +0.4 2,658,069 - EX28DRAFT_2619 0.52 -0.3 2,658,089 - EX28DRAFT_2619 0.53 -0.5 2,658,115 + EX28DRAFT_2619 0.55 -0.2 2,658,116 - EX28DRAFT_2619 0.55 -0.1 2,658,175 - EX28DRAFT_2619 0.58 +0.1 2,658,306 + EX28DRAFT_2619 0.64 -0.9 2,658,342 + EX28DRAFT_2619 0.66 +0.6 2,658,407 + EX28DRAFT_2619 0.70 -1.6 2,658,562 + EX28DRAFT_2619 0.78 -0.1 2,658,563 - EX28DRAFT_2619 0.78 -0.2 2,658,563 - EX28DRAFT_2619 0.78 -0.4 2,658,824 + +0.3 2,658,980 + -0.2 2,658,984 + +0.1 2,659,197 - EX28DRAFT_2620 0.21 -0.3 2,659,232 + EX28DRAFT_2620 0.26 +0.3 2,659,306 + EX28DRAFT_2620 0.37 -0.0 2,659,329 + EX28DRAFT_2620 0.40 +0.0 2,659,330 - EX28DRAFT_2620 0.40 +0.1 2,659,413 + EX28DRAFT_2620 0.53 -0.7 2,659,414 - EX28DRAFT_2620 0.53 -0.4 2,659,414 - EX28DRAFT_2620 0.53 -0.1 2,659,414 - EX28DRAFT_2620 0.53 -0.2 2,659,414 - EX28DRAFT_2620 0.53 -0.7 2,659,452 + EX28DRAFT_2620 0.58 +0.8 2,659,499 + EX28DRAFT_2620 0.65 -1.0 2,659,500 - EX28DRAFT_2620 0.65 -0.3 2,659,518 - EX28DRAFT_2620 0.68 +0.4 2,659,526 + EX28DRAFT_2620 0.69 +0.3 2,659,527 - EX28DRAFT_2620 0.69 -0.2 2,659,529 + EX28DRAFT_2620 0.70 +0.2 2,659,630 + EX28DRAFT_2620 0.85 +0.3 2,659,631 - EX28DRAFT_2620 0.85 +0.2 2,659,631 - EX28DRAFT_2620 0.85 -0.8 2,659,674 - +0.2 2,659,702 + +0.0 2,659,724 + -0.7 2,659,725 - +0.0 2,659,778 + -0.2 2,659,816 + -0.0 2,659,817 - -0.3 2,659,977 + +0.3 2,659,978 - -0.5 2,659,978 - -1.0 2,659,978 - -0.1 2,659,980 + +0.4
Or see this region's nucleotide sequence