Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2479

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2478 and EX28DRAFT_2479 are separated by 169 nucleotidesEX28DRAFT_2479 and EX28DRAFT_2480 are separated by 228 nucleotides EX28DRAFT_2478: EX28DRAFT_2478 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 2,506,272 to 2,507,924 _2478 EX28DRAFT_2479: EX28DRAFT_2479 - Nitrate/nitrite transporter, at 2,508,094 to 2,509,302 _2479 EX28DRAFT_2480: EX28DRAFT_2480 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 2,509,531 to 2,511,207 _2480 Position (kb) 2508 2509 2510Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2507.263 kb on + strand, within EX28DRAFT_2478at 2507.263 kb on + strand, within EX28DRAFT_2478at 2507.264 kb on - strand, within EX28DRAFT_2478at 2507.468 kb on + strand, within EX28DRAFT_2478at 2507.469 kb on - strand, within EX28DRAFT_2478at 2507.501 kb on + strand, within EX28DRAFT_2478at 2507.501 kb on + strand, within EX28DRAFT_2478at 2507.501 kb on + strand, within EX28DRAFT_2478at 2507.502 kb on - strand, within EX28DRAFT_2478at 2507.502 kb on - strand, within EX28DRAFT_2478at 2507.600 kb on - strand, within EX28DRAFT_2478at 2507.848 kb on + strandat 2507.944 kb on + strandat 2507.961 kb on + strandat 2507.971 kb on - strandat 2507.974 kb on - strandat 2507.987 kb on + strandat 2507.987 kb on + strandat 2508.035 kb on + strandat 2508.036 kb on - strandat 2508.046 kb on + strandat 2508.047 kb on - strandat 2508.051 kb on - strandat 2508.051 kb on - strandat 2508.061 kb on + strandat 2508.061 kb on + strandat 2508.072 kb on + strandat 2508.073 kb on - strandat 2508.073 kb on - strandat 2508.084 kb on - strandat 2508.084 kb on - strandat 2508.093 kb on + strandat 2508.154 kb on - strandat 2508.212 kb on + strandat 2508.212 kb on + strandat 2508.395 kb on + strand, within EX28DRAFT_2479at 2508.396 kb on - strand, within EX28DRAFT_2479at 2508.552 kb on + strand, within EX28DRAFT_2479at 2508.561 kb on + strand, within EX28DRAFT_2479at 2508.562 kb on - strand, within EX28DRAFT_2479at 2508.562 kb on - strand, within EX28DRAFT_2479at 2508.706 kb on - strand, within EX28DRAFT_2479at 2508.751 kb on - strand, within EX28DRAFT_2479at 2508.751 kb on - strand, within EX28DRAFT_2479at 2508.751 kb on - strand, within EX28DRAFT_2479at 2508.799 kb on + strand, within EX28DRAFT_2479at 2508.799 kb on + strand, within EX28DRAFT_2479at 2508.800 kb on - strand, within EX28DRAFT_2479at 2508.800 kb on - strand, within EX28DRAFT_2479at 2508.805 kb on + strand, within EX28DRAFT_2479at 2508.826 kb on + strand, within EX28DRAFT_2479at 2508.826 kb on + strand, within EX28DRAFT_2479at 2508.829 kb on + strand, within EX28DRAFT_2479at 2508.838 kb on + strand, within EX28DRAFT_2479at 2508.838 kb on + strand, within EX28DRAFT_2479at 2508.924 kb on + strand, within EX28DRAFT_2479at 2508.945 kb on + strand, within EX28DRAFT_2479at 2508.962 kb on - strand, within EX28DRAFT_2479at 2508.962 kb on - strand, within EX28DRAFT_2479at 2508.978 kb on + strand, within EX28DRAFT_2479at 2509.006 kb on - strand, within EX28DRAFT_2479at 2509.451 kb on + strandat 2509.451 kb on + strandat 2509.451 kb on + strandat 2509.451 kb on + strandat 2509.451 kb on + strandat 2509.451 kb on + strandat 2509.451 kb on + strandat 2509.451 kb on + strandat 2509.451 kb on + strandat 2509.452 kb on - strandat 2509.452 kb on - strandat 2509.452 kb on - strandat 2509.452 kb on - strandat 2509.457 kb on + strandat 2509.470 kb on - strandat 2509.474 kb on + strandat 2509.475 kb on - strandat 2509.552 kb on - strandat 2509.587 kb on + strandat 2509.588 kb on - strandat 2509.608 kb on + strandat 2509.608 kb on + strandat 2509.608 kb on + strandat 2509.609 kb on - strandat 2509.609 kb on - strandat 2509.618 kb on - strandat 2509.636 kb on + strandat 2509.668 kb on + strandat 2509.955 kb on + strand, within EX28DRAFT_2480at 2510.100 kb on + strand, within EX28DRAFT_2480at 2510.101 kb on - strand, within EX28DRAFT_2480at 2510.101 kb on - strand, within EX28DRAFT_2480at 2510.103 kb on + strand, within EX28DRAFT_2480at 2510.104 kb on - strand, within EX28DRAFT_2480

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,507,263 + EX28DRAFT_2478 0.60 -0.1
2,507,263 + EX28DRAFT_2478 0.60 +0.4
2,507,264 - EX28DRAFT_2478 0.60 -1.4
2,507,468 + EX28DRAFT_2478 0.72 +0.0
2,507,469 - EX28DRAFT_2478 0.72 -0.3
2,507,501 + EX28DRAFT_2478 0.74 -1.2
2,507,501 + EX28DRAFT_2478 0.74 +0.5
2,507,501 + EX28DRAFT_2478 0.74 +4.0
2,507,502 - EX28DRAFT_2478 0.74 +0.4
2,507,502 - EX28DRAFT_2478 0.74 +0.4
2,507,600 - EX28DRAFT_2478 0.80 -0.1
2,507,848 + -0.7
2,507,944 + -0.2
2,507,961 + +1.3
2,507,971 - +0.9
2,507,974 - -1.1
2,507,987 + +0.4
2,507,987 + -0.4
2,508,035 + -0.0
2,508,036 - -0.3
2,508,046 + +0.5
2,508,047 - +0.1
2,508,051 - -0.6
2,508,051 - +0.2
2,508,061 + -1.2
2,508,061 + +0.2
2,508,072 + +0.1
2,508,073 - -0.6
2,508,073 - -0.0
2,508,084 - -0.4
2,508,084 - -0.1
2,508,093 + -2.5
2,508,154 - +0.1
2,508,212 + -0.0
2,508,212 + -0.1
2,508,395 + EX28DRAFT_2479 0.25 -0.4
2,508,396 - EX28DRAFT_2479 0.25 +0.0
2,508,552 + EX28DRAFT_2479 0.38 +0.2
2,508,561 + EX28DRAFT_2479 0.39 -0.4
2,508,562 - EX28DRAFT_2479 0.39 +0.7
2,508,562 - EX28DRAFT_2479 0.39 +0.1
2,508,706 - EX28DRAFT_2479 0.51 +0.2
2,508,751 - EX28DRAFT_2479 0.54 +0.0
2,508,751 - EX28DRAFT_2479 0.54 +0.2
2,508,751 - EX28DRAFT_2479 0.54 +0.2
2,508,799 + EX28DRAFT_2479 0.58 +0.7
2,508,799 + EX28DRAFT_2479 0.58 +0.4
2,508,800 - EX28DRAFT_2479 0.58 -0.0
2,508,800 - EX28DRAFT_2479 0.58 +1.1
2,508,805 + EX28DRAFT_2479 0.59 +0.9
2,508,826 + EX28DRAFT_2479 0.61 -0.5
2,508,826 + EX28DRAFT_2479 0.61 -0.1
2,508,829 + EX28DRAFT_2479 0.61 -1.0
2,508,838 + EX28DRAFT_2479 0.62 -0.5
2,508,838 + EX28DRAFT_2479 0.62 +0.2
2,508,924 + EX28DRAFT_2479 0.69 -0.4
2,508,945 + EX28DRAFT_2479 0.70 -0.4
2,508,962 - EX28DRAFT_2479 0.72 -0.1
2,508,962 - EX28DRAFT_2479 0.72 +0.0
2,508,978 + EX28DRAFT_2479 0.73 -0.7
2,509,006 - EX28DRAFT_2479 0.75 -0.3
2,509,451 + -0.1
2,509,451 + -0.6
2,509,451 + +1.0
2,509,451 + -1.0
2,509,451 + +0.0
2,509,451 + +0.3
2,509,451 + -1.0
2,509,451 + -0.4
2,509,451 + +0.1
2,509,452 - -0.1
2,509,452 - +0.0
2,509,452 - -0.6
2,509,452 - -0.2
2,509,457 + +0.3
2,509,470 - -0.3
2,509,474 + +0.7
2,509,475 - +0.1
2,509,552 - +0.1
2,509,587 + +0.1
2,509,588 - -0.1
2,509,608 + +0.1
2,509,608 + -0.1
2,509,608 + -0.6
2,509,609 - +0.1
2,509,609 - -1.5
2,509,618 - -0.4
2,509,636 + +0.2
2,509,668 + -0.3
2,509,955 + EX28DRAFT_2480 0.25 +0.8
2,510,100 + EX28DRAFT_2480 0.34 -0.5
2,510,101 - EX28DRAFT_2480 0.34 +1.5
2,510,101 - EX28DRAFT_2480 0.34 -0.0
2,510,103 + EX28DRAFT_2480 0.34 +0.2
2,510,104 - EX28DRAFT_2480 0.34 +0.1

Or see this region's nucleotide sequence