Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2468 and EX28DRAFT_2469 overlap by 8 nucleotides EX28DRAFT_2469 and EX28DRAFT_2470 are separated by 143 nucleotides EX28DRAFT_2470 and EX28DRAFT_2471 are separated by 44 nucleotides EX28DRAFT_2471 and EX28DRAFT_2472 overlap by 4 nucleotides
EX28DRAFT_2468: EX28DRAFT_2468 - TIGR00245 family protein, at 2,497,763 to 2,498,545
_2468
EX28DRAFT_2469: EX28DRAFT_2469 - ABC-type uncharacterized transport system, ATPase component, at 2,498,538 to 2,499,209
_2469
EX28DRAFT_2470: EX28DRAFT_2470 - hypothetical protein, at 2,499,353 to 2,500,204
_2470
EX28DRAFT_2471: EX28DRAFT_2471 - Membrane protease subunits, stomatin/prohibitin homologs, at 2,500,249 to 2,501,163
_2471
EX28DRAFT_2472: EX28DRAFT_2472 - Membrane protein implicated in regulation of membrane protease activity, at 2,501,160 to 2,501,612
_2472
Position (kb)
2499
2500
2501 Strain fitness (log2 ratio)
-2
-1
0
1 at 2498.377 kb on + strand, within EX28DRAFT_2468 at 2498.379 kb on + strand, within EX28DRAFT_2468 at 2498.391 kb on + strand, within EX28DRAFT_2468 at 2498.392 kb on - strand, within EX28DRAFT_2468 at 2498.435 kb on + strand, within EX28DRAFT_2468 at 2498.436 kb on - strand, within EX28DRAFT_2468 at 2498.441 kb on - strand, within EX28DRAFT_2468 at 2498.527 kb on + strand at 2498.527 kb on + strand at 2498.534 kb on - strand at 2498.586 kb on - strand at 2498.586 kb on - strand at 2498.608 kb on - strand, within EX28DRAFT_2469 at 2498.608 kb on - strand, within EX28DRAFT_2469 at 2498.645 kb on + strand, within EX28DRAFT_2469 at 2498.882 kb on + strand, within EX28DRAFT_2469 at 2498.957 kb on - strand, within EX28DRAFT_2469 at 2499.074 kb on + strand, within EX28DRAFT_2469 at 2499.100 kb on - strand, within EX28DRAFT_2469 at 2499.187 kb on - strand at 2499.187 kb on - strand at 2499.187 kb on - strand at 2499.189 kb on + strand at 2499.190 kb on - strand at 2499.211 kb on - strand at 2499.235 kb on - strand at 2499.237 kb on + strand at 2499.252 kb on + strand at 2499.337 kb on - strand at 2499.345 kb on + strand at 2499.346 kb on - strand at 2499.361 kb on + strand at 2499.361 kb on + strand at 2499.361 kb on + strand at 2499.362 kb on - strand at 2499.415 kb on - strand at 2499.653 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.676 kb on - strand, within EX28DRAFT_2470 at 2499.702 kb on + strand, within EX28DRAFT_2470 at 2499.702 kb on + strand, within EX28DRAFT_2470 at 2499.740 kb on - strand, within EX28DRAFT_2470 at 2499.817 kb on + strand, within EX28DRAFT_2470 at 2499.817 kb on + strand, within EX28DRAFT_2470 at 2499.974 kb on - strand, within EX28DRAFT_2470 at 2499.978 kb on + strand, within EX28DRAFT_2470 at 2500.124 kb on + strand at 2500.124 kb on + strand at 2500.124 kb on + strand at 2500.124 kb on + strand at 2500.125 kb on - strand at 2500.125 kb on - strand at 2500.183 kb on + strand at 2500.184 kb on - strand at 2500.188 kb on - strand at 2500.193 kb on + strand at 2500.193 kb on + strand at 2500.194 kb on - strand at 2500.249 kb on - strand at 2500.290 kb on + strand at 2500.543 kb on + strand, within EX28DRAFT_2471 at 2500.544 kb on - strand, within EX28DRAFT_2471 at 2500.672 kb on - strand, within EX28DRAFT_2471 at 2500.672 kb on - strand, within EX28DRAFT_2471 at 2500.908 kb on - strand, within EX28DRAFT_2471 at 2501.005 kb on + strand, within EX28DRAFT_2471 at 2501.006 kb on - strand, within EX28DRAFT_2471 at 2501.006 kb on - strand, within EX28DRAFT_2471 at 2501.025 kb on + strand, within EX28DRAFT_2471
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,498,377 + EX28DRAFT_2468 0.78 -0.6 2,498,379 + EX28DRAFT_2468 0.79 -1.9 2,498,391 + EX28DRAFT_2468 0.80 -1.4 2,498,392 - EX28DRAFT_2468 0.80 -0.3 2,498,435 + EX28DRAFT_2468 0.86 +1.2 2,498,436 - EX28DRAFT_2468 0.86 +0.1 2,498,441 - EX28DRAFT_2468 0.87 +0.1 2,498,527 + -0.1 2,498,527 + +0.3 2,498,534 - -0.8 2,498,586 - -1.5 2,498,586 - +0.2 2,498,608 - EX28DRAFT_2469 0.10 +0.5 2,498,608 - EX28DRAFT_2469 0.10 -0.6 2,498,645 + EX28DRAFT_2469 0.16 -0.2 2,498,882 + EX28DRAFT_2469 0.51 +0.2 2,498,957 - EX28DRAFT_2469 0.62 -0.3 2,499,074 + EX28DRAFT_2469 0.80 -0.3 2,499,100 - EX28DRAFT_2469 0.84 -1.7 2,499,187 - +0.6 2,499,187 - +0.3 2,499,187 - -0.5 2,499,189 + -0.8 2,499,190 - +0.4 2,499,211 - -0.1 2,499,235 - +0.3 2,499,237 + -0.1 2,499,252 + -0.2 2,499,337 - +0.3 2,499,345 + -0.9 2,499,346 - -0.3 2,499,361 + -0.7 2,499,361 + -0.7 2,499,361 + +0.6 2,499,362 - -0.5 2,499,415 - +0.0 2,499,653 - EX28DRAFT_2470 0.35 +0.0 2,499,676 - EX28DRAFT_2470 0.38 -0.1 2,499,676 - EX28DRAFT_2470 0.38 +0.4 2,499,676 - EX28DRAFT_2470 0.38 +0.5 2,499,676 - EX28DRAFT_2470 0.38 +1.0 2,499,676 - EX28DRAFT_2470 0.38 +0.2 2,499,702 + EX28DRAFT_2470 0.41 -0.0 2,499,702 + EX28DRAFT_2470 0.41 +0.2 2,499,740 - EX28DRAFT_2470 0.45 +0.6 2,499,817 + EX28DRAFT_2470 0.54 +0.0 2,499,817 + EX28DRAFT_2470 0.54 -1.3 2,499,974 - EX28DRAFT_2470 0.73 -0.3 2,499,978 + EX28DRAFT_2470 0.73 +0.3 2,500,124 + -0.5 2,500,124 + -0.2 2,500,124 + -0.9 2,500,124 + +0.6 2,500,125 - +0.3 2,500,125 - +0.2 2,500,183 + -0.5 2,500,184 - -0.0 2,500,188 - +0.3 2,500,193 + -0.3 2,500,193 + -0.2 2,500,194 - -0.2 2,500,249 - +0.1 2,500,290 + +0.0 2,500,543 + EX28DRAFT_2471 0.32 -0.3 2,500,544 - EX28DRAFT_2471 0.32 +0.4 2,500,672 - EX28DRAFT_2471 0.46 -0.0 2,500,672 - EX28DRAFT_2471 0.46 +0.2 2,500,908 - EX28DRAFT_2471 0.72 -0.1 2,501,005 + EX28DRAFT_2471 0.83 -0.7 2,501,006 - EX28DRAFT_2471 0.83 -0.8 2,501,006 - EX28DRAFT_2471 0.83 +0.4 2,501,025 + EX28DRAFT_2471 0.85 +0.0
Or see this region's nucleotide sequence