Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2397 and EX28DRAFT_2398 overlap by 8 nucleotides EX28DRAFT_2398 and EX28DRAFT_2399 overlap by 14 nucleotides EX28DRAFT_2399 and EX28DRAFT_2400 are separated by 108 nucleotides EX28DRAFT_2400 and EX28DRAFT_2401 are separated by 131 nucleotides
EX28DRAFT_2397: EX28DRAFT_2397 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,423,541 to 2,424,374
_2397
EX28DRAFT_2398: EX28DRAFT_2398 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,424,367 to 2,425,203
_2398
EX28DRAFT_2399: EX28DRAFT_2399 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,425,190 to 2,425,894
_2399
EX28DRAFT_2400: EX28DRAFT_2400 - Cold shock proteins, at 2,426,003 to 2,426,476
_2400
EX28DRAFT_2401: EX28DRAFT_2401 - acetoin reductases, at 2,426,608 to 2,427,378
_2401
Position (kb)
2425
2426 Strain fitness (log2 ratio)
-1
0
1 at 2424.248 kb on + strand, within EX28DRAFT_2397 at 2424.978 kb on - strand, within EX28DRAFT_2398 at 2424.978 kb on - strand, within EX28DRAFT_2398 at 2425.034 kb on - strand, within EX28DRAFT_2398 at 2425.095 kb on + strand, within EX28DRAFT_2398 at 2425.700 kb on - strand, within EX28DRAFT_2399 at 2425.763 kb on + strand, within EX28DRAFT_2399 at 2425.763 kb on + strand, within EX28DRAFT_2399 at 2425.764 kb on - strand, within EX28DRAFT_2399 at 2425.764 kb on - strand, within EX28DRAFT_2399 at 2425.801 kb on + strand, within EX28DRAFT_2399 at 2425.802 kb on - strand, within EX28DRAFT_2399 at 2425.802 kb on - strand, within EX28DRAFT_2399 at 2425.802 kb on - strand, within EX28DRAFT_2399 at 2426.008 kb on + strand at 2426.008 kb on + strand at 2426.009 kb on - strand at 2426.267 kb on - strand, within EX28DRAFT_2400 at 2426.429 kb on - strand at 2426.444 kb on - strand at 2426.467 kb on + strand at 2426.468 kb on - strand at 2426.508 kb on - strand at 2426.508 kb on - strand at 2426.529 kb on + strand at 2426.530 kb on - strand at 2426.530 kb on - strand at 2426.599 kb on + strand at 2426.602 kb on + strand at 2426.602 kb on + strand at 2426.613 kb on + strand at 2426.635 kb on + strand at 2426.658 kb on - strand at 2426.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,424,248 + EX28DRAFT_2397 0.85 +0.5 2,424,978 - EX28DRAFT_2398 0.73 +0.6 2,424,978 - EX28DRAFT_2398 0.73 +0.0 2,425,034 - EX28DRAFT_2398 0.80 -0.2 2,425,095 + EX28DRAFT_2398 0.87 +0.2 2,425,700 - EX28DRAFT_2399 0.72 +1.4 2,425,763 + EX28DRAFT_2399 0.81 -0.3 2,425,763 + EX28DRAFT_2399 0.81 -0.5 2,425,764 - EX28DRAFT_2399 0.81 +1.3 2,425,764 - EX28DRAFT_2399 0.81 +0.2 2,425,801 + EX28DRAFT_2399 0.87 +0.5 2,425,802 - EX28DRAFT_2399 0.87 +0.2 2,425,802 - EX28DRAFT_2399 0.87 -0.1 2,425,802 - EX28DRAFT_2399 0.87 -1.5 2,426,008 + +0.0 2,426,008 + +0.0 2,426,009 - -0.0 2,426,267 - EX28DRAFT_2400 0.56 -0.4 2,426,429 - +0.6 2,426,444 - -0.5 2,426,467 + +0.1 2,426,468 - -0.1 2,426,508 - +0.5 2,426,508 - +0.0 2,426,529 + +0.1 2,426,530 - +0.5 2,426,530 - -0.4 2,426,599 + +0.5 2,426,602 + -0.3 2,426,602 + +0.6 2,426,613 + +0.4 2,426,635 + +0.1 2,426,658 - -0.3 2,426,682 - -0.0
Or see this region's nucleotide sequence