Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2389 and EX28DRAFT_2390 are separated by 43 nucleotides EX28DRAFT_2390 and EX28DRAFT_2391 overlap by 4 nucleotides EX28DRAFT_2391 and EX28DRAFT_2392 are separated by 328 nucleotides
EX28DRAFT_2389: EX28DRAFT_2389 - Secreted and surface protein containing fasciclin-like repeats, at 2,415,353 to 2,415,916
_2389
EX28DRAFT_2390: EX28DRAFT_2390 - RNA polymerase sigma factor, sigma-70 family, at 2,415,960 to 2,416,514
_2390
EX28DRAFT_2391: EX28DRAFT_2391 - Uncharacterized protein conserved in bacteria, at 2,416,511 to 2,417,158
_2391
EX28DRAFT_2392: EX28DRAFT_2392 - Short-chain alcohol dehydrogenase of unknown specificity, at 2,417,487 to 2,418,227
_2392
Position (kb)
2416
2417
2418 Strain fitness (log2 ratio)
-2
-1
0
1 at 2415.550 kb on + strand, within EX28DRAFT_2389 at 2415.652 kb on + strand, within EX28DRAFT_2389 at 2415.671 kb on - strand, within EX28DRAFT_2389 at 2415.680 kb on + strand, within EX28DRAFT_2389 at 2415.680 kb on + strand, within EX28DRAFT_2389 at 2415.681 kb on - strand, within EX28DRAFT_2389 at 2415.701 kb on + strand, within EX28DRAFT_2389 at 2415.702 kb on - strand, within EX28DRAFT_2389 at 2415.702 kb on - strand, within EX28DRAFT_2389 at 2415.702 kb on - strand, within EX28DRAFT_2389 at 2415.854 kb on + strand, within EX28DRAFT_2389 at 2415.855 kb on - strand, within EX28DRAFT_2389 at 2415.855 kb on - strand, within EX28DRAFT_2389 at 2415.855 kb on - strand, within EX28DRAFT_2389 at 2415.910 kb on + strand at 2415.910 kb on + strand at 2415.914 kb on + strand at 2415.915 kb on - strand at 2415.922 kb on + strand at 2415.925 kb on - strand at 2416.159 kb on - strand, within EX28DRAFT_2390 at 2416.199 kb on + strand, within EX28DRAFT_2390 at 2416.200 kb on - strand, within EX28DRAFT_2390 at 2416.217 kb on + strand, within EX28DRAFT_2390 at 2416.218 kb on - strand, within EX28DRAFT_2390 at 2416.270 kb on - strand, within EX28DRAFT_2390 at 2416.554 kb on - strand at 2416.763 kb on + strand, within EX28DRAFT_2391 at 2416.978 kb on + strand, within EX28DRAFT_2391 at 2416.979 kb on - strand, within EX28DRAFT_2391 at 2416.979 kb on - strand, within EX28DRAFT_2391 at 2417.027 kb on - strand, within EX28DRAFT_2391 at 2417.028 kb on + strand, within EX28DRAFT_2391 at 2417.028 kb on + strand, within EX28DRAFT_2391 at 2417.028 kb on + strand, within EX28DRAFT_2391 at 2417.141 kb on + strand at 2417.194 kb on - strand at 2417.261 kb on - strand at 2417.267 kb on + strand at 2417.517 kb on - strand at 2417.571 kb on - strand, within EX28DRAFT_2392 at 2417.636 kb on + strand, within EX28DRAFT_2392 at 2417.900 kb on + strand, within EX28DRAFT_2392 at 2417.952 kb on + strand, within EX28DRAFT_2392 at 2417.996 kb on - strand, within EX28DRAFT_2392 at 2418.032 kb on + strand, within EX28DRAFT_2392 at 2418.032 kb on + strand, within EX28DRAFT_2392 at 2418.033 kb on - strand, within EX28DRAFT_2392 at 2418.033 kb on - strand, within EX28DRAFT_2392 at 2418.033 kb on - strand, within EX28DRAFT_2392 at 2418.155 kb on - strand at 2418.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,415,550 + EX28DRAFT_2389 0.35 -0.6 2,415,652 + EX28DRAFT_2389 0.53 +0.1 2,415,671 - EX28DRAFT_2389 0.56 +0.5 2,415,680 + EX28DRAFT_2389 0.58 -0.5 2,415,680 + EX28DRAFT_2389 0.58 -0.4 2,415,681 - EX28DRAFT_2389 0.58 +0.1 2,415,701 + EX28DRAFT_2389 0.62 +0.9 2,415,702 - EX28DRAFT_2389 0.62 -0.3 2,415,702 - EX28DRAFT_2389 0.62 -0.4 2,415,702 - EX28DRAFT_2389 0.62 -0.9 2,415,854 + EX28DRAFT_2389 0.89 +0.4 2,415,855 - EX28DRAFT_2389 0.89 +0.1 2,415,855 - EX28DRAFT_2389 0.89 +0.4 2,415,855 - EX28DRAFT_2389 0.89 +0.0 2,415,910 + -0.2 2,415,910 + +0.4 2,415,914 + -0.6 2,415,915 - +0.0 2,415,922 + -0.3 2,415,925 - -0.3 2,416,159 - EX28DRAFT_2390 0.36 +0.4 2,416,199 + EX28DRAFT_2390 0.43 -0.4 2,416,200 - EX28DRAFT_2390 0.43 +0.1 2,416,217 + EX28DRAFT_2390 0.46 -0.1 2,416,218 - EX28DRAFT_2390 0.46 -0.2 2,416,270 - EX28DRAFT_2390 0.56 -0.2 2,416,554 - -1.0 2,416,763 + EX28DRAFT_2391 0.39 -1.9 2,416,978 + EX28DRAFT_2391 0.72 -0.5 2,416,979 - EX28DRAFT_2391 0.72 +1.1 2,416,979 - EX28DRAFT_2391 0.72 -0.8 2,417,027 - EX28DRAFT_2391 0.80 +0.8 2,417,028 + EX28DRAFT_2391 0.80 -0.6 2,417,028 + EX28DRAFT_2391 0.80 -0.2 2,417,028 + EX28DRAFT_2391 0.80 -0.4 2,417,141 + -0.3 2,417,194 - +0.1 2,417,261 - +1.0 2,417,267 + -0.1 2,417,517 - -0.1 2,417,571 - EX28DRAFT_2392 0.11 -0.2 2,417,636 + EX28DRAFT_2392 0.20 -0.1 2,417,900 + EX28DRAFT_2392 0.56 +0.3 2,417,952 + EX28DRAFT_2392 0.63 -1.2 2,417,996 - EX28DRAFT_2392 0.69 +0.4 2,418,032 + EX28DRAFT_2392 0.74 -1.2 2,418,032 + EX28DRAFT_2392 0.74 -0.1 2,418,033 - EX28DRAFT_2392 0.74 +0.2 2,418,033 - EX28DRAFT_2392 0.74 +0.3 2,418,033 - EX28DRAFT_2392 0.74 +0.7 2,418,155 - +0.8 2,418,155 - -0.1
Or see this region's nucleotide sequence