Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2360

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2359 and EX28DRAFT_2360 are separated by 62 nucleotidesEX28DRAFT_2360 and EX28DRAFT_2361 are separated by 89 nucleotides EX28DRAFT_2359: EX28DRAFT_2359 - 5'-methylthioribose kinase (EC 2.7.1.100), at 2,378,900 to 2,380,099 _2359 EX28DRAFT_2360: EX28DRAFT_2360 - Uncharacterized conserved protein, at 2,380,162 to 2,381,403 _2360 EX28DRAFT_2361: EX28DRAFT_2361 - ABC-type sugar transport system, periplasmic component, at 2,381,493 to 2,382,557 _2361 Position (kb) 2380 2381 2382Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2379.282 kb on - strand, within EX28DRAFT_2359at 2379.282 kb on - strand, within EX28DRAFT_2359at 2379.314 kb on + strand, within EX28DRAFT_2359at 2379.315 kb on - strand, within EX28DRAFT_2359at 2380.014 kb on + strandat 2380.025 kb on - strandat 2380.101 kb on + strandat 2380.101 kb on + strandat 2380.151 kb on + strandat 2380.197 kb on + strandat 2380.200 kb on - strandat 2380.215 kb on + strandat 2380.352 kb on + strand, within EX28DRAFT_2360at 2380.352 kb on + strand, within EX28DRAFT_2360at 2380.466 kb on + strand, within EX28DRAFT_2360at 2380.467 kb on - strand, within EX28DRAFT_2360at 2380.895 kb on + strand, within EX28DRAFT_2360at 2380.896 kb on - strand, within EX28DRAFT_2360at 2380.929 kb on - strand, within EX28DRAFT_2360at 2381.023 kb on - strand, within EX28DRAFT_2360at 2381.096 kb on + strand, within EX28DRAFT_2360at 2381.096 kb on + strand, within EX28DRAFT_2360at 2381.097 kb on - strand, within EX28DRAFT_2360at 2381.292 kb on - strandat 2381.408 kb on - strandat 2381.495 kb on - strandat 2381.495 kb on - strandat 2381.495 kb on - strandat 2382.017 kb on - strand, within EX28DRAFT_2361at 2382.266 kb on + strand, within EX28DRAFT_2361at 2382.277 kb on + strand, within EX28DRAFT_2361at 2382.277 kb on + strand, within EX28DRAFT_2361at 2382.393 kb on - strand, within EX28DRAFT_2361

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,379,282 - EX28DRAFT_2359 0.32 -0.1
2,379,282 - EX28DRAFT_2359 0.32 -0.8
2,379,314 + EX28DRAFT_2359 0.34 -0.4
2,379,315 - EX28DRAFT_2359 0.35 -0.4
2,380,014 + +0.7
2,380,025 - +0.3
2,380,101 + -0.3
2,380,101 + +0.3
2,380,151 + -0.5
2,380,197 + +0.3
2,380,200 - +0.3
2,380,215 + +0.4
2,380,352 + EX28DRAFT_2360 0.15 -0.1
2,380,352 + EX28DRAFT_2360 0.15 -0.2
2,380,466 + EX28DRAFT_2360 0.24 -2.4
2,380,467 - EX28DRAFT_2360 0.25 -0.2
2,380,895 + EX28DRAFT_2360 0.59 -0.1
2,380,896 - EX28DRAFT_2360 0.59 -0.1
2,380,929 - EX28DRAFT_2360 0.62 +3.0
2,381,023 - EX28DRAFT_2360 0.69 -0.6
2,381,096 + EX28DRAFT_2360 0.75 -0.8
2,381,096 + EX28DRAFT_2360 0.75 -0.4
2,381,097 - EX28DRAFT_2360 0.75 -1.0
2,381,292 - +0.1
2,381,408 - +0.1
2,381,495 - +0.1
2,381,495 - -0.8
2,381,495 - +2.5
2,382,017 - EX28DRAFT_2361 0.49 -0.3
2,382,266 + EX28DRAFT_2361 0.73 +1.6
2,382,277 + EX28DRAFT_2361 0.74 -0.1
2,382,277 + EX28DRAFT_2361 0.74 -0.5
2,382,393 - EX28DRAFT_2361 0.85 -0.3

Or see this region's nucleotide sequence