Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2314

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2312 and EX28DRAFT_2313 are separated by 44 nucleotidesEX28DRAFT_2313 and EX28DRAFT_2314 are separated by 5 nucleotidesEX28DRAFT_2314 and EX28DRAFT_2315 are separated by 400 nucleotides EX28DRAFT_2312: EX28DRAFT_2312 - probable rRNA maturation factor YbeY, at 2,337,689 to 2,338,156 _2312 EX28DRAFT_2313: EX28DRAFT_2313 - Putative Mg2+ and Co2+ transporter CorC, at 2,338,201 to 2,339,124 _2313 EX28DRAFT_2314: EX28DRAFT_2314 - apolipoprotein N-acyltransferase, at 2,339,130 to 2,340,668 _2314 EX28DRAFT_2315: EX28DRAFT_2315 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,341,069 to 2,341,974 _2315 Position (kb) 2339 2340 2341Strain fitness (log2 ratio) -3 -2 -1 0 1at 2338.220 kb on + strandat 2338.287 kb on + strandat 2338.404 kb on + strand, within EX28DRAFT_2313at 2338.405 kb on - strand, within EX28DRAFT_2313at 2338.405 kb on - strand, within EX28DRAFT_2313at 2338.662 kb on - strand, within EX28DRAFT_2313at 2339.064 kb on + strandat 2339.064 kb on + strandat 2339.069 kb on + strandat 2340.727 kb on - strandat 2340.727 kb on - strandat 2340.850 kb on + strandat 2340.851 kb on - strandat 2340.888 kb on - strandat 2340.963 kb on + strandat 2340.964 kb on - strandat 2340.984 kb on - strandat 2341.010 kb on - strandat 2341.011 kb on + strandat 2341.011 kb on + strandat 2341.011 kb on + strandat 2341.012 kb on - strandat 2341.012 kb on - strandat 2341.012 kb on - strandat 2341.053 kb on - strandat 2341.080 kb on + strandat 2341.231 kb on + strand, within EX28DRAFT_2315at 2341.271 kb on - strand, within EX28DRAFT_2315at 2341.271 kb on - strand, within EX28DRAFT_2315at 2341.359 kb on + strand, within EX28DRAFT_2315at 2341.452 kb on + strand, within EX28DRAFT_2315

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,338,220 + -0.9
2,338,287 + -3.1
2,338,404 + EX28DRAFT_2313 0.22 -1.6
2,338,405 - EX28DRAFT_2313 0.22 -3.6
2,338,405 - EX28DRAFT_2313 0.22 +1.7
2,338,662 - EX28DRAFT_2313 0.50 -3.4
2,339,064 + -2.7
2,339,064 + -0.2
2,339,069 + -3.0
2,340,727 - -0.1
2,340,727 - -1.0
2,340,850 + +0.2
2,340,851 - -0.0
2,340,888 - +0.1
2,340,963 + +0.6
2,340,964 - +0.6
2,340,984 - +0.4
2,341,010 - +0.2
2,341,011 + +0.2
2,341,011 + -0.7
2,341,011 + +0.6
2,341,012 - +0.4
2,341,012 - +0.5
2,341,012 - +1.6
2,341,053 - -0.6
2,341,080 + -0.3
2,341,231 + EX28DRAFT_2315 0.18 +0.5
2,341,271 - EX28DRAFT_2315 0.22 +0.5
2,341,271 - EX28DRAFT_2315 0.22 +0.4
2,341,359 + EX28DRAFT_2315 0.32 +0.2
2,341,452 + EX28DRAFT_2315 0.42 +0.6

Or see this region's nucleotide sequence