Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2243 and EX28DRAFT_2244 overlap by 4 nucleotides EX28DRAFT_2244 and EX28DRAFT_2245 are separated by 22 nucleotides
EX28DRAFT_2243: EX28DRAFT_2243 - cation diffusion facilitator family transporter, at 2,266,805 to 2,267,743
_2243
EX28DRAFT_2244: EX28DRAFT_2244 - nicotinamide mononucleotide transporter PnuC, at 2,267,740 to 2,268,459
_2244
EX28DRAFT_2245: EX28DRAFT_2245 - quinolinate synthetase (EC 2.5.1.72), at 2,268,482 to 2,269,525
_2245
Position (kb)
2267
2268
2269 Strain fitness (log2 ratio)
-1
0
1 at 2266.759 kb on - strand at 2266.762 kb on - strand at 2267.036 kb on - strand, within EX28DRAFT_2243 at 2267.111 kb on - strand, within EX28DRAFT_2243 at 2267.636 kb on + strand, within EX28DRAFT_2243 at 2267.636 kb on + strand, within EX28DRAFT_2243 at 2267.669 kb on + strand at 2267.670 kb on - strand at 2267.781 kb on + strand at 2267.828 kb on + strand, within EX28DRAFT_2244 at 2267.918 kb on + strand, within EX28DRAFT_2244 at 2267.919 kb on - strand, within EX28DRAFT_2244 at 2268.081 kb on + strand, within EX28DRAFT_2244 at 2268.081 kb on + strand, within EX28DRAFT_2244 at 2268.082 kb on - strand, within EX28DRAFT_2244 at 2268.083 kb on + strand, within EX28DRAFT_2244 at 2268.083 kb on + strand, within EX28DRAFT_2244 at 2268.083 kb on + strand, within EX28DRAFT_2244 at 2268.083 kb on + strand, within EX28DRAFT_2244 at 2268.083 kb on + strand, within EX28DRAFT_2244 at 2268.083 kb on + strand, within EX28DRAFT_2244 at 2268.083 kb on + strand, within EX28DRAFT_2244 at 2268.083 kb on + strand, within EX28DRAFT_2244 at 2268.095 kb on - strand, within EX28DRAFT_2244 at 2268.213 kb on - strand, within EX28DRAFT_2244 at 2268.258 kb on - strand, within EX28DRAFT_2244 at 2268.352 kb on - strand, within EX28DRAFT_2244 at 2268.422 kb on - strand at 2268.422 kb on - strand at 2268.423 kb on + strand at 2268.423 kb on + strand at 2268.424 kb on - strand at 2268.424 kb on - strand at 2268.483 kb on + strand at 2268.483 kb on + strand at 2268.483 kb on + strand at 2268.487 kb on + strand at 2268.487 kb on + strand at 2268.487 kb on + strand at 2268.487 kb on + strand at 2268.487 kb on + strand at 2268.488 kb on - strand at 2268.492 kb on - strand at 2268.531 kb on - strand at 2268.724 kb on - strand, within EX28DRAFT_2245 at 2268.787 kb on + strand, within EX28DRAFT_2245 at 2268.975 kb on + strand, within EX28DRAFT_2245 at 2268.976 kb on - strand, within EX28DRAFT_2245 at 2268.976 kb on - strand, within EX28DRAFT_2245 at 2268.976 kb on - strand, within EX28DRAFT_2245 at 2269.006 kb on + strand, within EX28DRAFT_2245 at 2269.007 kb on - strand, within EX28DRAFT_2245 at 2269.199 kb on - strand, within EX28DRAFT_2245 at 2269.256 kb on - strand, within EX28DRAFT_2245 at 2269.333 kb on + strand, within EX28DRAFT_2245 at 2269.380 kb on + strand, within EX28DRAFT_2245
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,266,759 - -0.0 2,266,762 - -0.4 2,267,036 - EX28DRAFT_2243 0.25 +1.1 2,267,111 - EX28DRAFT_2243 0.33 +1.2 2,267,636 + EX28DRAFT_2243 0.88 -0.6 2,267,636 + EX28DRAFT_2243 0.88 +0.6 2,267,669 + -0.0 2,267,670 - +0.1 2,267,781 + +0.1 2,267,828 + EX28DRAFT_2244 0.12 -0.7 2,267,918 + EX28DRAFT_2244 0.25 -0.1 2,267,919 - EX28DRAFT_2244 0.25 +0.0 2,268,081 + EX28DRAFT_2244 0.47 -0.4 2,268,081 + EX28DRAFT_2244 0.47 -0.2 2,268,082 - EX28DRAFT_2244 0.47 -0.1 2,268,083 + EX28DRAFT_2244 0.48 -0.2 2,268,083 + EX28DRAFT_2244 0.48 +0.6 2,268,083 + EX28DRAFT_2244 0.48 -0.8 2,268,083 + EX28DRAFT_2244 0.48 -0.9 2,268,083 + EX28DRAFT_2244 0.48 -0.7 2,268,083 + EX28DRAFT_2244 0.48 +0.0 2,268,083 + EX28DRAFT_2244 0.48 +0.1 2,268,083 + EX28DRAFT_2244 0.48 +0.7 2,268,095 - EX28DRAFT_2244 0.49 -0.1 2,268,213 - EX28DRAFT_2244 0.66 -0.3 2,268,258 - EX28DRAFT_2244 0.72 -0.2 2,268,352 - EX28DRAFT_2244 0.85 -0.1 2,268,422 - -0.3 2,268,422 - -0.9 2,268,423 + +0.0 2,268,423 + +0.5 2,268,424 - +0.4 2,268,424 - -0.9 2,268,483 + +0.9 2,268,483 + -0.3 2,268,483 + +0.0 2,268,487 + +1.1 2,268,487 + -0.1 2,268,487 + +0.3 2,268,487 + +0.5 2,268,487 + +0.1 2,268,488 - -0.8 2,268,492 - -0.1 2,268,531 - -0.5 2,268,724 - EX28DRAFT_2245 0.23 -0.3 2,268,787 + EX28DRAFT_2245 0.29 +0.0 2,268,975 + EX28DRAFT_2245 0.47 -0.8 2,268,976 - EX28DRAFT_2245 0.47 -0.8 2,268,976 - EX28DRAFT_2245 0.47 +0.3 2,268,976 - EX28DRAFT_2245 0.47 -0.0 2,269,006 + EX28DRAFT_2245 0.50 -0.4 2,269,007 - EX28DRAFT_2245 0.50 +0.3 2,269,199 - EX28DRAFT_2245 0.69 +0.1 2,269,256 - EX28DRAFT_2245 0.74 +0.6 2,269,333 + EX28DRAFT_2245 0.82 -0.6 2,269,380 + EX28DRAFT_2245 0.86 -0.2
Or see this region's nucleotide sequence