Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2179 and EX28DRAFT_2180 are separated by 84 nucleotides EX28DRAFT_2180 and EX28DRAFT_2181 overlap by 4 nucleotides EX28DRAFT_2181 and EX28DRAFT_2182 are separated by 125 nucleotides
EX28DRAFT_2179: EX28DRAFT_2179 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,201,593 to 2,202,336
_2179
EX28DRAFT_2180: EX28DRAFT_2180 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 2,202,421 to 2,203,080
_2180
EX28DRAFT_2181: EX28DRAFT_2181 - ABC-type polar amino acid transport system, ATPase component, at 2,203,077 to 2,203,799
_2181
EX28DRAFT_2182: EX28DRAFT_2182 - Small-conductance mechanosensitive channel, at 2,203,925 to 2,206,138
_2182
Position (kb)
2203
2204 Strain fitness (log2 ratio)
-1
0
1 at 2202.082 kb on + strand, within EX28DRAFT_2179 at 2202.082 kb on + strand, within EX28DRAFT_2179 at 2202.083 kb on - strand, within EX28DRAFT_2179 at 2202.142 kb on + strand, within EX28DRAFT_2179 at 2202.209 kb on - strand, within EX28DRAFT_2179 at 2202.292 kb on + strand at 2202.293 kb on - strand at 2202.305 kb on - strand at 2202.330 kb on + strand at 2202.331 kb on - strand at 2202.345 kb on - strand at 2202.406 kb on + strand at 2202.418 kb on - strand at 2202.418 kb on - strand at 2202.459 kb on + strand at 2202.459 kb on + strand at 2202.459 kb on + strand at 2202.460 kb on - strand at 2202.478 kb on - strand at 2202.712 kb on - strand, within EX28DRAFT_2180 at 2202.730 kb on + strand, within EX28DRAFT_2180 at 2202.731 kb on - strand, within EX28DRAFT_2180 at 2202.731 kb on - strand, within EX28DRAFT_2180 at 2202.731 kb on - strand, within EX28DRAFT_2180 at 2202.731 kb on - strand, within EX28DRAFT_2180 at 2202.898 kb on - strand, within EX28DRAFT_2180 at 2202.898 kb on - strand, within EX28DRAFT_2180 at 2202.904 kb on - strand, within EX28DRAFT_2180 at 2202.904 kb on - strand, within EX28DRAFT_2180 at 2203.012 kb on + strand, within EX28DRAFT_2180 at 2203.163 kb on - strand, within EX28DRAFT_2181 at 2203.193 kb on + strand, within EX28DRAFT_2181 at 2203.271 kb on - strand, within EX28DRAFT_2181 at 2203.271 kb on - strand, within EX28DRAFT_2181 at 2203.271 kb on - strand, within EX28DRAFT_2181 at 2203.335 kb on + strand, within EX28DRAFT_2181 at 2203.701 kb on - strand, within EX28DRAFT_2181 at 2203.706 kb on + strand, within EX28DRAFT_2181 at 2203.707 kb on - strand, within EX28DRAFT_2181 at 2203.816 kb on + strand at 2203.885 kb on - strand at 2203.885 kb on - strand at 2203.886 kb on + strand at 2203.886 kb on + strand at 2203.886 kb on + strand at 2203.886 kb on + strand at 2203.887 kb on - strand at 2203.887 kb on - strand at 2203.887 kb on - strand at 2203.887 kb on - strand at 2203.890 kb on + strand at 2203.891 kb on - strand at 2203.891 kb on - strand at 2203.950 kb on + strand at 2203.951 kb on - strand at 2204.277 kb on - strand, within EX28DRAFT_2182 at 2204.412 kb on - strand, within EX28DRAFT_2182 at 2204.498 kb on - strand, within EX28DRAFT_2182 at 2204.509 kb on - strand, within EX28DRAFT_2182 at 2204.711 kb on + strand, within EX28DRAFT_2182
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,202,082 + EX28DRAFT_2179 0.66 +0.1 2,202,082 + EX28DRAFT_2179 0.66 -1.1 2,202,083 - EX28DRAFT_2179 0.66 -0.6 2,202,142 + EX28DRAFT_2179 0.74 +0.9 2,202,209 - EX28DRAFT_2179 0.83 -0.6 2,202,292 + -0.6 2,202,293 - -0.0 2,202,305 - -0.2 2,202,330 + +0.7 2,202,331 - -1.1 2,202,345 - +0.2 2,202,406 + -1.2 2,202,418 - +0.0 2,202,418 - +0.0 2,202,459 + -0.6 2,202,459 + -0.6 2,202,459 + -0.3 2,202,460 - -0.3 2,202,478 - +0.6 2,202,712 - EX28DRAFT_2180 0.44 +0.1 2,202,730 + EX28DRAFT_2180 0.47 +0.1 2,202,731 - EX28DRAFT_2180 0.47 -1.4 2,202,731 - EX28DRAFT_2180 0.47 -0.1 2,202,731 - EX28DRAFT_2180 0.47 -0.3 2,202,731 - EX28DRAFT_2180 0.47 +0.3 2,202,898 - EX28DRAFT_2180 0.72 -0.2 2,202,898 - EX28DRAFT_2180 0.72 -0.1 2,202,904 - EX28DRAFT_2180 0.73 -0.5 2,202,904 - EX28DRAFT_2180 0.73 +0.9 2,203,012 + EX28DRAFT_2180 0.90 -1.1 2,203,163 - EX28DRAFT_2181 0.12 -0.3 2,203,193 + EX28DRAFT_2181 0.16 +0.3 2,203,271 - EX28DRAFT_2181 0.27 +0.2 2,203,271 - EX28DRAFT_2181 0.27 +1.4 2,203,271 - EX28DRAFT_2181 0.27 -0.1 2,203,335 + EX28DRAFT_2181 0.36 -0.6 2,203,701 - EX28DRAFT_2181 0.86 -0.5 2,203,706 + EX28DRAFT_2181 0.87 +0.1 2,203,707 - EX28DRAFT_2181 0.87 -0.6 2,203,816 + -1.1 2,203,885 - +0.6 2,203,885 - +0.3 2,203,886 + +0.4 2,203,886 + -0.0 2,203,886 + -0.2 2,203,886 + -0.2 2,203,887 - -0.2 2,203,887 - +0.4 2,203,887 - -0.7 2,203,887 - +0.4 2,203,890 + +0.1 2,203,891 - +0.4 2,203,891 - +0.4 2,203,950 + -0.7 2,203,951 - +0.3 2,204,277 - EX28DRAFT_2182 0.16 -1.3 2,204,412 - EX28DRAFT_2182 0.22 +0.3 2,204,498 - EX28DRAFT_2182 0.26 +0.3 2,204,509 - EX28DRAFT_2182 0.26 -0.4 2,204,711 + EX28DRAFT_2182 0.36 -0.9
Or see this region's nucleotide sequence