Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2132

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2131 and EX28DRAFT_2132 are separated by 108 nucleotidesEX28DRAFT_2132 and EX28DRAFT_2133 are separated by 1 nucleotidesEX28DRAFT_2133 and EX28DRAFT_2134 are separated by 5 nucleotides EX28DRAFT_2131: EX28DRAFT_2131 - ribosomal protein S12 methylthiotransferase RimO, at 2,149,350 to 2,150,675 _2131 EX28DRAFT_2132: EX28DRAFT_2132 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,150,784 to 2,151,695 _2132 EX28DRAFT_2133: EX28DRAFT_2133 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,151,697 to 2,152,617 _2133 EX28DRAFT_2134: EX28DRAFT_2134 - ABC-type dipeptide transport system, periplasmic component, at 2,152,623 to 2,154,161 _2134 Position (kb) 2150 2151 2152Strain fitness (log2 ratio) -3 -2 -1 0 1at 2150.059 kb on - strand, within EX28DRAFT_2131at 2150.365 kb on + strand, within EX28DRAFT_2131at 2150.615 kb on + strandat 2150.616 kb on - strandat 2150.619 kb on - strandat 2150.619 kb on - strandat 2150.649 kb on + strandat 2150.674 kb on - strandat 2150.765 kb on - strandat 2150.780 kb on - strandat 2150.786 kb on - strandat 2150.838 kb on - strandat 2150.903 kb on + strand, within EX28DRAFT_2132at 2150.994 kb on - strand, within EX28DRAFT_2132at 2150.994 kb on - strand, within EX28DRAFT_2132at 2151.311 kb on - strand, within EX28DRAFT_2132at 2151.493 kb on + strand, within EX28DRAFT_2132at 2151.545 kb on + strand, within EX28DRAFT_2132at 2151.698 kb on + strandat 2151.698 kb on + strandat 2151.699 kb on - strandat 2151.699 kb on - strandat 2151.699 kb on - strandat 2151.699 kb on - strandat 2151.704 kb on + strandat 2151.705 kb on - strandat 2151.749 kb on - strandat 2151.762 kb on + strandat 2151.762 kb on + strandat 2152.005 kb on + strand, within EX28DRAFT_2133at 2152.006 kb on - strand, within EX28DRAFT_2133at 2152.006 kb on - strand, within EX28DRAFT_2133at 2152.007 kb on + strand, within EX28DRAFT_2133at 2152.100 kb on + strand, within EX28DRAFT_2133at 2152.100 kb on + strand, within EX28DRAFT_2133at 2152.100 kb on + strand, within EX28DRAFT_2133at 2152.101 kb on - strand, within EX28DRAFT_2133at 2152.101 kb on - strand, within EX28DRAFT_2133at 2152.413 kb on + strand, within EX28DRAFT_2133at 2152.414 kb on - strand, within EX28DRAFT_2133at 2152.414 kb on - strand, within EX28DRAFT_2133at 2152.414 kb on - strand, within EX28DRAFT_2133at 2152.415 kb on + strand, within EX28DRAFT_2133at 2152.416 kb on - strand, within EX28DRAFT_2133at 2152.431 kb on + strand, within EX28DRAFT_2133at 2152.432 kb on - strand, within EX28DRAFT_2133at 2152.432 kb on - strand, within EX28DRAFT_2133at 2152.432 kb on - strand, within EX28DRAFT_2133at 2152.432 kb on - strand, within EX28DRAFT_2133at 2152.433 kb on + strand, within EX28DRAFT_2133at 2152.433 kb on + strand, within EX28DRAFT_2133at 2152.433 kb on + strand, within EX28DRAFT_2133at 2152.434 kb on - strand, within EX28DRAFT_2133at 2152.434 kb on - strand, within EX28DRAFT_2133at 2152.533 kb on + strandat 2152.534 kb on - strandat 2152.607 kb on + strandat 2152.608 kb on - strandat 2152.625 kb on - strandat 2152.649 kb on + strandat 2152.650 kb on - strandat 2152.672 kb on + strandat 2152.673 kb on - strandat 2152.673 kb on - strandat 2152.673 kb on - strandat 2152.673 kb on - strandat 2152.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,150,059 - EX28DRAFT_2131 0.53 -0.3
2,150,365 + EX28DRAFT_2131 0.77 +0.0
2,150,615 + +0.5
2,150,616 - -0.1
2,150,619 - -0.1
2,150,619 - +0.8
2,150,649 + +0.1
2,150,674 - +0.4
2,150,765 - +0.4
2,150,780 - +0.8
2,150,786 - +1.0
2,150,838 - -0.2
2,150,903 + EX28DRAFT_2132 0.13 +1.7
2,150,994 - EX28DRAFT_2132 0.23 -1.5
2,150,994 - EX28DRAFT_2132 0.23 -1.6
2,151,311 - EX28DRAFT_2132 0.58 -0.3
2,151,493 + EX28DRAFT_2132 0.78 -1.0
2,151,545 + EX28DRAFT_2132 0.83 -1.2
2,151,698 + -0.9
2,151,698 + -0.9
2,151,699 - -0.5
2,151,699 - -0.3
2,151,699 - -0.0
2,151,699 - -0.1
2,151,704 + -0.3
2,151,705 - -1.3
2,151,749 - -0.7
2,151,762 + -1.1
2,151,762 + -0.4
2,152,005 + EX28DRAFT_2133 0.33 -0.3
2,152,006 - EX28DRAFT_2133 0.34 -1.5
2,152,006 - EX28DRAFT_2133 0.34 -0.9
2,152,007 + EX28DRAFT_2133 0.34 -0.2
2,152,100 + EX28DRAFT_2133 0.44 +0.6
2,152,100 + EX28DRAFT_2133 0.44 +0.2
2,152,100 + EX28DRAFT_2133 0.44 -1.1
2,152,101 - EX28DRAFT_2133 0.44 -0.3
2,152,101 - EX28DRAFT_2133 0.44 -1.6
2,152,413 + EX28DRAFT_2133 0.78 -0.3
2,152,414 - EX28DRAFT_2133 0.78 -0.6
2,152,414 - EX28DRAFT_2133 0.78 -0.8
2,152,414 - EX28DRAFT_2133 0.78 -1.8
2,152,415 + EX28DRAFT_2133 0.78 -0.4
2,152,416 - EX28DRAFT_2133 0.78 -1.8
2,152,431 + EX28DRAFT_2133 0.80 -0.5
2,152,432 - EX28DRAFT_2133 0.80 -1.8
2,152,432 - EX28DRAFT_2133 0.80 -1.6
2,152,432 - EX28DRAFT_2133 0.80 +1.1
2,152,432 - EX28DRAFT_2133 0.80 -0.3
2,152,433 + EX28DRAFT_2133 0.80 -1.0
2,152,433 + EX28DRAFT_2133 0.80 -1.9
2,152,433 + EX28DRAFT_2133 0.80 -0.7
2,152,434 - EX28DRAFT_2133 0.80 -0.4
2,152,434 - EX28DRAFT_2133 0.80 -1.4
2,152,533 + -2.2
2,152,534 - -1.4
2,152,607 + -3.5
2,152,608 - -0.5
2,152,625 - -0.5
2,152,649 + -1.0
2,152,650 - +0.4
2,152,672 + -0.6
2,152,673 - +0.2
2,152,673 - +0.7
2,152,673 - +0.3
2,152,673 - +0.4
2,152,673 - +1.0

Or see this region's nucleotide sequence