Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2109 and EX28DRAFT_2110 are separated by 171 nucleotides EX28DRAFT_2110 and EX28DRAFT_2111 overlap by 8 nucleotides EX28DRAFT_2111 and EX28DRAFT_2112 are separated by 273 nucleotides
EX28DRAFT_2109: EX28DRAFT_2109 - Reverse transcriptase (RNA-dependent DNA polymerase), at 2,131,057 to 2,132,040
_2109
EX28DRAFT_2110: EX28DRAFT_2110 - hypothetical protein, at 2,132,212 to 2,132,949
_2110
EX28DRAFT_2111: EX28DRAFT_2111 - hypothetical protein, at 2,132,942 to 2,133,487
_2111
EX28DRAFT_2112: EX28DRAFT_2112 - Integrase core domain, at 2,133,761 to 2,134,245
_2112
Position (kb)
2132
2133 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2131.254 kb on + strand, within EX28DRAFT_2109 at 2131.258 kb on + strand, within EX28DRAFT_2109 at 2131.258 kb on + strand, within EX28DRAFT_2109 at 2131.506 kb on + strand, within EX28DRAFT_2109 at 2131.576 kb on - strand, within EX28DRAFT_2109 at 2132.054 kb on + strand at 2132.208 kb on - strand at 2132.281 kb on + strand at 2132.281 kb on + strand at 2132.313 kb on - strand, within EX28DRAFT_2110 at 2132.424 kb on + strand, within EX28DRAFT_2110 at 2132.695 kb on + strand, within EX28DRAFT_2110 at 2132.995 kb on + strand at 2133.257 kb on + strand, within EX28DRAFT_2111 at 2133.295 kb on + strand, within EX28DRAFT_2111 at 2133.296 kb on - strand, within EX28DRAFT_2111 at 2133.303 kb on - strand, within EX28DRAFT_2111 at 2133.345 kb on + strand, within EX28DRAFT_2111 at 2133.346 kb on - strand, within EX28DRAFT_2111 at 2133.346 kb on - strand, within EX28DRAFT_2111 at 2133.390 kb on + strand, within EX28DRAFT_2111 at 2133.409 kb on + strand, within EX28DRAFT_2111 at 2133.411 kb on + strand, within EX28DRAFT_2111 at 2133.453 kb on + strand at 2133.489 kb on + strand at 2133.497 kb on + strand at 2133.499 kb on + strand at 2133.588 kb on + strand at 2133.747 kb on - strand at 2133.749 kb on + strand at 2133.749 kb on + strand at 2133.749 kb on + strand at 2133.749 kb on + strand at 2133.749 kb on + strand at 2133.753 kb on + strand at 2133.753 kb on + strand at 2133.754 kb on - strand at 2133.767 kb on - strand at 2133.767 kb on - strand at 2133.767 kb on - strand at 2133.770 kb on - strand at 2133.785 kb on - strand at 2133.868 kb on + strand, within EX28DRAFT_2112 at 2133.870 kb on + strand, within EX28DRAFT_2112 at 2133.871 kb on - strand, within EX28DRAFT_2112
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,131,254 + EX28DRAFT_2109 0.20 -0.4 2,131,258 + EX28DRAFT_2109 0.20 +0.6 2,131,258 + EX28DRAFT_2109 0.20 -0.4 2,131,506 + EX28DRAFT_2109 0.46 +0.1 2,131,576 - EX28DRAFT_2109 0.53 -0.7 2,132,054 + -1.9 2,132,208 - -0.4 2,132,281 + -0.0 2,132,281 + -0.3 2,132,313 - EX28DRAFT_2110 0.14 -0.2 2,132,424 + EX28DRAFT_2110 0.29 +2.3 2,132,695 + EX28DRAFT_2110 0.65 -0.9 2,132,995 + -0.6 2,133,257 + EX28DRAFT_2111 0.58 +0.9 2,133,295 + EX28DRAFT_2111 0.65 -0.4 2,133,296 - EX28DRAFT_2111 0.65 +0.1 2,133,303 - EX28DRAFT_2111 0.66 -0.9 2,133,345 + EX28DRAFT_2111 0.74 +0.7 2,133,346 - EX28DRAFT_2111 0.74 -0.2 2,133,346 - EX28DRAFT_2111 0.74 -0.1 2,133,390 + EX28DRAFT_2111 0.82 -0.8 2,133,409 + EX28DRAFT_2111 0.86 -0.9 2,133,411 + EX28DRAFT_2111 0.86 +0.4 2,133,453 + -0.2 2,133,489 + -0.7 2,133,497 + -1.3 2,133,499 + -0.3 2,133,588 + -0.1 2,133,747 - +0.2 2,133,749 + -0.3 2,133,749 + +0.0 2,133,749 + -0.8 2,133,749 + -0.0 2,133,749 + -0.4 2,133,753 + -0.2 2,133,753 + -0.5 2,133,754 - -0.3 2,133,767 - -2.3 2,133,767 - -0.6 2,133,767 - +0.1 2,133,770 - -0.1 2,133,785 - +0.3 2,133,868 + EX28DRAFT_2112 0.22 +1.2 2,133,870 + EX28DRAFT_2112 0.22 -0.9 2,133,871 - EX28DRAFT_2112 0.23 -0.3
Or see this region's nucleotide sequence