Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2060 and EX28DRAFT_2061 are separated by 90 nucleotides EX28DRAFT_2061 and EX28DRAFT_2062 are separated by 151 nucleotides EX28DRAFT_2062 and EX28DRAFT_2063 are separated by 38 nucleotides
EX28DRAFT_2060: EX28DRAFT_2060 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 2,083,269 to 2,084,237
_2060
EX28DRAFT_2061: EX28DRAFT_2061 - Predicted membrane protein, at 2,084,328 to 2,084,762
_2061
EX28DRAFT_2062: EX28DRAFT_2062 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase], at 2,084,914 to 2,086,632
_2062
EX28DRAFT_2063: EX28DRAFT_2063 - L-threonine aldolase (EC 4.1.2.5), at 2,086,671 to 2,087,672
_2063
Position (kb)
2084
2085
2086
2087 Strain fitness (log2 ratio)
-2
-1
0
1 at 2083.985 kb on + strand, within EX28DRAFT_2060 at 2083.986 kb on - strand, within EX28DRAFT_2060 at 2084.111 kb on + strand, within EX28DRAFT_2060 at 2084.136 kb on + strand, within EX28DRAFT_2060 at 2084.137 kb on - strand, within EX28DRAFT_2060 at 2084.138 kb on + strand, within EX28DRAFT_2060 at 2084.139 kb on - strand, within EX28DRAFT_2060 at 2084.188 kb on - strand at 2084.236 kb on - strand at 2084.303 kb on + strand at 2084.319 kb on - strand at 2084.319 kb on - strand at 2084.407 kb on + strand, within EX28DRAFT_2061 at 2084.408 kb on - strand, within EX28DRAFT_2061 at 2084.408 kb on - strand, within EX28DRAFT_2061 at 2084.436 kb on + strand, within EX28DRAFT_2061 at 2084.437 kb on - strand, within EX28DRAFT_2061 at 2084.437 kb on - strand, within EX28DRAFT_2061 at 2084.541 kb on - strand, within EX28DRAFT_2061 at 2084.811 kb on - strand at 2084.834 kb on + strand at 2084.882 kb on + strand at 2084.935 kb on + strand at 2084.935 kb on + strand at 2084.935 kb on + strand at 2084.935 kb on + strand at 2084.935 kb on + strand at 2084.935 kb on + strand at 2084.935 kb on + strand at 2084.935 kb on + strand at 2084.935 kb on + strand at 2084.935 kb on + strand at 2084.936 kb on - strand at 2084.936 kb on - strand at 2084.936 kb on - strand at 2084.936 kb on - strand at 2084.937 kb on + strand at 2084.937 kb on + strand at 2084.937 kb on + strand at 2084.938 kb on - strand at 2084.938 kb on - strand at 2084.938 kb on - strand at 2084.938 kb on - strand at 2084.939 kb on + strand at 2084.939 kb on + strand at 2084.940 kb on - strand at 2084.973 kb on + strand at 2084.973 kb on + strand at 2084.974 kb on - strand at 2084.974 kb on - strand at 2085.102 kb on - strand, within EX28DRAFT_2062 at 2085.292 kb on + strand, within EX28DRAFT_2062 at 2085.638 kb on - strand, within EX28DRAFT_2062 at 2085.649 kb on + strand, within EX28DRAFT_2062 at 2085.650 kb on - strand, within EX28DRAFT_2062 at 2085.790 kb on - strand, within EX28DRAFT_2062 at 2085.849 kb on + strand, within EX28DRAFT_2062 at 2085.855 kb on + strand, within EX28DRAFT_2062 at 2085.856 kb on - strand, within EX28DRAFT_2062 at 2086.042 kb on - strand, within EX28DRAFT_2062 at 2086.042 kb on - strand, within EX28DRAFT_2062 at 2086.042 kb on - strand, within EX28DRAFT_2062 at 2086.081 kb on + strand, within EX28DRAFT_2062 at 2086.082 kb on - strand, within EX28DRAFT_2062 at 2086.551 kb on + strand at 2086.558 kb on + strand at 2086.558 kb on + strand at 2086.558 kb on + strand at 2086.558 kb on + strand at 2086.558 kb on + strand at 2086.559 kb on - strand at 2086.559 kb on - strand at 2086.559 kb on - strand at 2086.559 kb on - strand at 2086.559 kb on - strand at 2086.561 kb on - strand at 2086.561 kb on - strand at 2086.561 kb on - strand at 2086.659 kb on + strand at 2086.896 kb on + strand, within EX28DRAFT_2063 at 2086.896 kb on + strand, within EX28DRAFT_2063 at 2086.923 kb on + strand, within EX28DRAFT_2063 at 2086.923 kb on + strand, within EX28DRAFT_2063 at 2086.923 kb on + strand, within EX28DRAFT_2063 at 2086.923 kb on + strand, within EX28DRAFT_2063 at 2086.923 kb on + strand, within EX28DRAFT_2063 at 2086.924 kb on - strand, within EX28DRAFT_2063 at 2086.924 kb on - strand, within EX28DRAFT_2063 at 2086.924 kb on - strand, within EX28DRAFT_2063 at 2086.924 kb on - strand, within EX28DRAFT_2063 at 2086.924 kb on - strand, within EX28DRAFT_2063 at 2086.924 kb on - strand, within EX28DRAFT_2063 at 2087.112 kb on + strand, within EX28DRAFT_2063 at 2087.112 kb on + strand, within EX28DRAFT_2063 at 2087.177 kb on + strand, within EX28DRAFT_2063 at 2087.200 kb on - strand, within EX28DRAFT_2063 at 2087.307 kb on + strand, within EX28DRAFT_2063 at 2087.307 kb on + strand, within EX28DRAFT_2063 at 2087.366 kb on + strand, within EX28DRAFT_2063 at 2087.389 kb on - strand, within EX28DRAFT_2063 at 2087.601 kb on - strand at 2087.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,083,985 + EX28DRAFT_2060 0.74 -1.6 2,083,986 - EX28DRAFT_2060 0.74 +0.4 2,084,111 + EX28DRAFT_2060 0.87 +1.2 2,084,136 + EX28DRAFT_2060 0.89 -0.2 2,084,137 - EX28DRAFT_2060 0.90 +0.2 2,084,138 + EX28DRAFT_2060 0.90 -0.2 2,084,139 - EX28DRAFT_2060 0.90 +1.1 2,084,188 - +0.8 2,084,236 - +0.0 2,084,303 + -0.2 2,084,319 - -0.3 2,084,319 - -0.1 2,084,407 + EX28DRAFT_2061 0.18 -0.2 2,084,408 - EX28DRAFT_2061 0.18 -1.0 2,084,408 - EX28DRAFT_2061 0.18 -0.6 2,084,436 + EX28DRAFT_2061 0.25 -0.1 2,084,437 - EX28DRAFT_2061 0.25 -0.6 2,084,437 - EX28DRAFT_2061 0.25 -1.4 2,084,541 - EX28DRAFT_2061 0.49 -0.6 2,084,811 - +0.0 2,084,834 + +0.4 2,084,882 + -0.6 2,084,935 + +0.3 2,084,935 + -0.3 2,084,935 + +1.1 2,084,935 + -1.0 2,084,935 + -0.1 2,084,935 + +0.2 2,084,935 + -0.4 2,084,935 + -0.3 2,084,935 + +0.8 2,084,935 + -1.9 2,084,936 - +0.4 2,084,936 - -0.7 2,084,936 - -0.2 2,084,936 - +0.1 2,084,937 + -0.2 2,084,937 + +0.3 2,084,937 + -0.1 2,084,938 - -0.7 2,084,938 - -0.8 2,084,938 - -0.2 2,084,938 - +0.1 2,084,939 + -0.2 2,084,939 + -0.5 2,084,940 - -0.1 2,084,973 + +0.2 2,084,973 + +0.0 2,084,974 - -0.2 2,084,974 - +0.3 2,085,102 - EX28DRAFT_2062 0.11 +0.5 2,085,292 + EX28DRAFT_2062 0.22 -0.2 2,085,638 - EX28DRAFT_2062 0.42 -0.2 2,085,649 + EX28DRAFT_2062 0.43 -0.8 2,085,650 - EX28DRAFT_2062 0.43 +0.8 2,085,790 - EX28DRAFT_2062 0.51 -0.2 2,085,849 + EX28DRAFT_2062 0.54 -0.0 2,085,855 + EX28DRAFT_2062 0.55 -2.5 2,085,856 - EX28DRAFT_2062 0.55 -1.6 2,086,042 - EX28DRAFT_2062 0.66 +0.2 2,086,042 - EX28DRAFT_2062 0.66 -0.0 2,086,042 - EX28DRAFT_2062 0.66 -1.4 2,086,081 + EX28DRAFT_2062 0.68 +0.5 2,086,082 - EX28DRAFT_2062 0.68 +0.2 2,086,551 + +0.4 2,086,558 + +0.9 2,086,558 + -0.8 2,086,558 + -0.2 2,086,558 + -0.6 2,086,558 + +0.2 2,086,559 - -0.5 2,086,559 - -0.3 2,086,559 - -0.5 2,086,559 - -0.2 2,086,559 - +0.6 2,086,561 - +0.7 2,086,561 - -0.5 2,086,561 - -0.5 2,086,659 + +1.3 2,086,896 + EX28DRAFT_2063 0.22 -0.8 2,086,896 + EX28DRAFT_2063 0.22 -0.1 2,086,923 + EX28DRAFT_2063 0.25 -0.3 2,086,923 + EX28DRAFT_2063 0.25 -1.4 2,086,923 + EX28DRAFT_2063 0.25 +0.0 2,086,923 + EX28DRAFT_2063 0.25 -0.3 2,086,923 + EX28DRAFT_2063 0.25 -0.1 2,086,924 - EX28DRAFT_2063 0.25 -0.1 2,086,924 - EX28DRAFT_2063 0.25 -0.1 2,086,924 - EX28DRAFT_2063 0.25 -0.4 2,086,924 - EX28DRAFT_2063 0.25 +0.2 2,086,924 - EX28DRAFT_2063 0.25 -0.3 2,086,924 - EX28DRAFT_2063 0.25 +1.3 2,087,112 + EX28DRAFT_2063 0.44 +0.3 2,087,112 + EX28DRAFT_2063 0.44 +0.2 2,087,177 + EX28DRAFT_2063 0.50 +1.1 2,087,200 - EX28DRAFT_2063 0.53 +0.3 2,087,307 + EX28DRAFT_2063 0.63 +0.2 2,087,307 + EX28DRAFT_2063 0.63 -0.3 2,087,366 + EX28DRAFT_2063 0.69 -0.7 2,087,389 - EX28DRAFT_2063 0.72 -0.2 2,087,601 - -0.1 2,087,601 - +1.3
Or see this region's nucleotide sequence