Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2055

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2054 and EX28DRAFT_2055 are separated by 159 nucleotidesEX28DRAFT_2055 and EX28DRAFT_2056 overlap by 4 nucleotides EX28DRAFT_2054: EX28DRAFT_2054 - RND family efflux transporter, MFP subunit, at 2,075,438 to 2,076,553 _2054 EX28DRAFT_2055: EX28DRAFT_2055 - Uncharacterized protein conserved in bacteria, at 2,076,713 to 2,077,669 _2055 EX28DRAFT_2056: EX28DRAFT_2056 - Predicted ATP-dependent endonuclease of the OLD family, at 2,077,666 to 2,079,324 _2056 Position (kb) 2076 2077 2078Strain fitness (log2 ratio) -3 -2 -1 0 1at 2075.727 kb on + strand, within EX28DRAFT_2054at 2075.728 kb on - strand, within EX28DRAFT_2054at 2075.728 kb on - strand, within EX28DRAFT_2054at 2075.730 kb on + strand, within EX28DRAFT_2054at 2075.730 kb on + strand, within EX28DRAFT_2054at 2075.730 kb on + strand, within EX28DRAFT_2054at 2075.737 kb on + strand, within EX28DRAFT_2054at 2075.819 kb on - strand, within EX28DRAFT_2054at 2075.842 kb on + strand, within EX28DRAFT_2054at 2075.842 kb on + strand, within EX28DRAFT_2054at 2076.113 kb on - strand, within EX28DRAFT_2054at 2076.113 kb on - strand, within EX28DRAFT_2054at 2076.116 kb on + strand, within EX28DRAFT_2054at 2076.134 kb on - strand, within EX28DRAFT_2054at 2076.448 kb on - strandat 2076.497 kb on + strandat 2076.553 kb on + strandat 2076.558 kb on - strandat 2076.567 kb on - strandat 2076.584 kb on + strandat 2076.689 kb on - strandat 2076.709 kb on + strandat 2076.710 kb on - strandat 2076.710 kb on - strandat 2076.710 kb on - strandat 2076.710 kb on - strandat 2077.228 kb on + strand, within EX28DRAFT_2055at 2077.432 kb on + strand, within EX28DRAFT_2055at 2077.433 kb on - strand, within EX28DRAFT_2055at 2077.433 kb on - strand, within EX28DRAFT_2055at 2077.433 kb on - strand, within EX28DRAFT_2055at 2077.433 kb on - strand, within EX28DRAFT_2055at 2077.540 kb on + strand, within EX28DRAFT_2055at 2077.541 kb on - strand, within EX28DRAFT_2055at 2077.893 kb on - strand, within EX28DRAFT_2056at 2077.896 kb on + strand, within EX28DRAFT_2056at 2077.896 kb on + strand, within EX28DRAFT_2056at 2077.896 kb on + strand, within EX28DRAFT_2056at 2077.897 kb on - strand, within EX28DRAFT_2056at 2077.897 kb on - strand, within EX28DRAFT_2056at 2077.897 kb on - strand, within EX28DRAFT_2056at 2077.897 kb on - strand, within EX28DRAFT_2056at 2077.989 kb on - strand, within EX28DRAFT_2056at 2078.368 kb on - strand, within EX28DRAFT_2056

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,075,727 + EX28DRAFT_2054 0.26 -0.1
2,075,728 - EX28DRAFT_2054 0.26 -0.9
2,075,728 - EX28DRAFT_2054 0.26 -0.7
2,075,730 + EX28DRAFT_2054 0.26 -0.1
2,075,730 + EX28DRAFT_2054 0.26 -0.1
2,075,730 + EX28DRAFT_2054 0.26 -0.5
2,075,737 + EX28DRAFT_2054 0.27 +0.1
2,075,819 - EX28DRAFT_2054 0.34 +0.2
2,075,842 + EX28DRAFT_2054 0.36 -0.1
2,075,842 + EX28DRAFT_2054 0.36 -1.5
2,076,113 - EX28DRAFT_2054 0.60 -0.4
2,076,113 - EX28DRAFT_2054 0.60 +0.1
2,076,116 + EX28DRAFT_2054 0.61 -0.1
2,076,134 - EX28DRAFT_2054 0.62 -0.2
2,076,448 - -0.4
2,076,497 + +1.6
2,076,553 + -1.4
2,076,558 - +0.4
2,076,567 - +0.3
2,076,584 + -1.1
2,076,689 - -0.8
2,076,709 + -0.9
2,076,710 - +0.1
2,076,710 - -0.1
2,076,710 - -0.4
2,076,710 - +0.4
2,077,228 + EX28DRAFT_2055 0.54 -1.7
2,077,432 + EX28DRAFT_2055 0.75 +0.5
2,077,433 - EX28DRAFT_2055 0.75 -0.0
2,077,433 - EX28DRAFT_2055 0.75 -0.3
2,077,433 - EX28DRAFT_2055 0.75 -1.6
2,077,433 - EX28DRAFT_2055 0.75 -0.7
2,077,540 + EX28DRAFT_2055 0.86 -0.2
2,077,541 - EX28DRAFT_2055 0.87 -1.0
2,077,893 - EX28DRAFT_2056 0.14 -0.9
2,077,896 + EX28DRAFT_2056 0.14 -2.8
2,077,896 + EX28DRAFT_2056 0.14 -1.0
2,077,896 + EX28DRAFT_2056 0.14 -1.4
2,077,897 - EX28DRAFT_2056 0.14 +0.1
2,077,897 - EX28DRAFT_2056 0.14 -0.3
2,077,897 - EX28DRAFT_2056 0.14 -1.1
2,077,897 - EX28DRAFT_2056 0.14 -1.4
2,077,989 - EX28DRAFT_2056 0.19 -1.1
2,078,368 - EX28DRAFT_2056 0.42 -0.1

Or see this region's nucleotide sequence