Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2036

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2035 and EX28DRAFT_2036 are separated by 275 nucleotidesEX28DRAFT_2036 and EX28DRAFT_2037 are separated by 1 nucleotidesEX28DRAFT_2037 and EX28DRAFT_2038 are separated by 10 nucleotides EX28DRAFT_2035: EX28DRAFT_2035 - Arabinose efflux permease, at 2,049,519 to 2,050,667 _2035 EX28DRAFT_2036: EX28DRAFT_2036 - DMSO reductase anchor subunit, at 2,050,943 to 2,051,806 _2036 EX28DRAFT_2037: EX28DRAFT_2037 - DMSO reductase, iron-sulfur subunit, at 2,051,808 to 2,052,425 _2037 EX28DRAFT_2038: EX28DRAFT_2038 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family, at 2,052,436 to 2,054,880 _2038 Position (kb) 2050 2051 2052Strain fitness (log2 ratio) -2 -1 0 1 2at 2049.992 kb on - strand, within EX28DRAFT_2035at 2050.009 kb on + strand, within EX28DRAFT_2035at 2050.009 kb on + strand, within EX28DRAFT_2035at 2050.023 kb on + strand, within EX28DRAFT_2035at 2050.024 kb on - strand, within EX28DRAFT_2035at 2050.038 kb on - strand, within EX28DRAFT_2035at 2050.249 kb on + strand, within EX28DRAFT_2035at 2050.249 kb on + strand, within EX28DRAFT_2035at 2050.250 kb on - strand, within EX28DRAFT_2035at 2050.253 kb on - strand, within EX28DRAFT_2035at 2050.262 kb on + strand, within EX28DRAFT_2035at 2050.263 kb on - strand, within EX28DRAFT_2035at 2050.265 kb on - strand, within EX28DRAFT_2035at 2050.265 kb on - strand, within EX28DRAFT_2035at 2050.350 kb on + strand, within EX28DRAFT_2035at 2050.444 kb on + strand, within EX28DRAFT_2035at 2050.447 kb on + strand, within EX28DRAFT_2035at 2050.447 kb on + strand, within EX28DRAFT_2035at 2050.447 kb on + strand, within EX28DRAFT_2035at 2050.448 kb on - strand, within EX28DRAFT_2035at 2050.492 kb on - strand, within EX28DRAFT_2035at 2050.492 kb on - strand, within EX28DRAFT_2035at 2050.594 kb on - strandat 2050.657 kb on + strandat 2050.657 kb on + strandat 2050.657 kb on + strandat 2050.657 kb on + strandat 2050.658 kb on - strandat 2050.658 kb on - strandat 2050.658 kb on - strandat 2050.673 kb on - strandat 2050.744 kb on - strandat 2050.759 kb on + strandat 2050.759 kb on + strandat 2050.760 kb on - strandat 2050.760 kb on - strandat 2050.810 kb on + strandat 2050.811 kb on - strandat 2050.927 kb on - strandat 2050.960 kb on + strandat 2050.961 kb on - strandat 2050.961 kb on - strandat 2050.964 kb on + strandat 2050.965 kb on - strandat 2050.972 kb on + strandat 2050.983 kb on + strandat 2051.062 kb on - strand, within EX28DRAFT_2036at 2051.368 kb on - strand, within EX28DRAFT_2036at 2051.368 kb on - strand, within EX28DRAFT_2036at 2051.397 kb on + strand, within EX28DRAFT_2036at 2051.397 kb on + strand, within EX28DRAFT_2036at 2051.398 kb on - strand, within EX28DRAFT_2036at 2051.853 kb on - strandat 2051.853 kb on - strandat 2052.080 kb on - strand, within EX28DRAFT_2037at 2052.307 kb on + strand, within EX28DRAFT_2037at 2052.402 kb on - strandat 2052.523 kb on - strandat 2052.652 kb on - strandat 2052.736 kb on + strand, within EX28DRAFT_2038at 2052.737 kb on - strand, within EX28DRAFT_2038

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,049,992 - EX28DRAFT_2035 0.41 -0.5
2,050,009 + EX28DRAFT_2035 0.43 -2.7
2,050,009 + EX28DRAFT_2035 0.43 +0.3
2,050,023 + EX28DRAFT_2035 0.44 -0.7
2,050,024 - EX28DRAFT_2035 0.44 +0.3
2,050,038 - EX28DRAFT_2035 0.45 -1.5
2,050,249 + EX28DRAFT_2035 0.64 +1.1
2,050,249 + EX28DRAFT_2035 0.64 -0.0
2,050,250 - EX28DRAFT_2035 0.64 -0.4
2,050,253 - EX28DRAFT_2035 0.64 +0.8
2,050,262 + EX28DRAFT_2035 0.65 -0.6
2,050,263 - EX28DRAFT_2035 0.65 +0.8
2,050,265 - EX28DRAFT_2035 0.65 -0.5
2,050,265 - EX28DRAFT_2035 0.65 -1.2
2,050,350 + EX28DRAFT_2035 0.72 -0.3
2,050,444 + EX28DRAFT_2035 0.81 -0.9
2,050,447 + EX28DRAFT_2035 0.81 -0.5
2,050,447 + EX28DRAFT_2035 0.81 -1.6
2,050,447 + EX28DRAFT_2035 0.81 -0.7
2,050,448 - EX28DRAFT_2035 0.81 -0.2
2,050,492 - EX28DRAFT_2035 0.85 +0.7
2,050,492 - EX28DRAFT_2035 0.85 -0.6
2,050,594 - -0.2
2,050,657 + -0.3
2,050,657 + -0.4
2,050,657 + +0.5
2,050,657 + -2.1
2,050,658 - -0.3
2,050,658 - +0.2
2,050,658 - -0.0
2,050,673 - -1.0
2,050,744 - -0.1
2,050,759 + +1.4
2,050,759 + +1.0
2,050,760 - +0.4
2,050,760 - +0.3
2,050,810 + +0.0
2,050,811 - +0.5
2,050,927 - -0.0
2,050,960 + -0.4
2,050,961 - -2.0
2,050,961 - -2.7
2,050,964 + -0.0
2,050,965 - -0.1
2,050,972 + +0.3
2,050,983 + -0.0
2,051,062 - EX28DRAFT_2036 0.14 -1.1
2,051,368 - EX28DRAFT_2036 0.49 -0.6
2,051,368 - EX28DRAFT_2036 0.49 -0.1
2,051,397 + EX28DRAFT_2036 0.53 +0.2
2,051,397 + EX28DRAFT_2036 0.53 -0.2
2,051,398 - EX28DRAFT_2036 0.53 -0.7
2,051,853 - +0.8
2,051,853 - -0.0
2,052,080 - EX28DRAFT_2037 0.44 -0.9
2,052,307 + EX28DRAFT_2037 0.81 -0.4
2,052,402 - +2.0
2,052,523 - +0.9
2,052,652 - -0.2
2,052,736 + EX28DRAFT_2038 0.12 -0.3
2,052,737 - EX28DRAFT_2038 0.12 +1.1

Or see this region's nucleotide sequence