Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2035 and EX28DRAFT_2036 are separated by 275 nucleotides EX28DRAFT_2036 and EX28DRAFT_2037 are separated by 1 nucleotides EX28DRAFT_2037 and EX28DRAFT_2038 are separated by 10 nucleotides
EX28DRAFT_2035: EX28DRAFT_2035 - Arabinose efflux permease, at 2,049,519 to 2,050,667
_2035
EX28DRAFT_2036: EX28DRAFT_2036 - DMSO reductase anchor subunit, at 2,050,943 to 2,051,806
_2036
EX28DRAFT_2037: EX28DRAFT_2037 - DMSO reductase, iron-sulfur subunit, at 2,051,808 to 2,052,425
_2037
EX28DRAFT_2038: EX28DRAFT_2038 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family, at 2,052,436 to 2,054,880
_2038
Position (kb)
2050
2051
2052 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2049.992 kb on - strand, within EX28DRAFT_2035 at 2050.009 kb on + strand, within EX28DRAFT_2035 at 2050.009 kb on + strand, within EX28DRAFT_2035 at 2050.023 kb on + strand, within EX28DRAFT_2035 at 2050.024 kb on - strand, within EX28DRAFT_2035 at 2050.038 kb on - strand, within EX28DRAFT_2035 at 2050.249 kb on + strand, within EX28DRAFT_2035 at 2050.249 kb on + strand, within EX28DRAFT_2035 at 2050.250 kb on - strand, within EX28DRAFT_2035 at 2050.253 kb on - strand, within EX28DRAFT_2035 at 2050.262 kb on + strand, within EX28DRAFT_2035 at 2050.263 kb on - strand, within EX28DRAFT_2035 at 2050.265 kb on - strand, within EX28DRAFT_2035 at 2050.265 kb on - strand, within EX28DRAFT_2035 at 2050.350 kb on + strand, within EX28DRAFT_2035 at 2050.444 kb on + strand, within EX28DRAFT_2035 at 2050.447 kb on + strand, within EX28DRAFT_2035 at 2050.447 kb on + strand, within EX28DRAFT_2035 at 2050.447 kb on + strand, within EX28DRAFT_2035 at 2050.448 kb on - strand, within EX28DRAFT_2035 at 2050.492 kb on - strand, within EX28DRAFT_2035 at 2050.492 kb on - strand, within EX28DRAFT_2035 at 2050.594 kb on - strand at 2050.657 kb on + strand at 2050.657 kb on + strand at 2050.657 kb on + strand at 2050.657 kb on + strand at 2050.658 kb on - strand at 2050.658 kb on - strand at 2050.658 kb on - strand at 2050.673 kb on - strand at 2050.744 kb on - strand at 2050.759 kb on + strand at 2050.759 kb on + strand at 2050.760 kb on - strand at 2050.760 kb on - strand at 2050.810 kb on + strand at 2050.811 kb on - strand at 2050.927 kb on - strand at 2050.960 kb on + strand at 2050.961 kb on - strand at 2050.961 kb on - strand at 2050.964 kb on + strand at 2050.965 kb on - strand at 2050.972 kb on + strand at 2050.983 kb on + strand at 2051.062 kb on - strand, within EX28DRAFT_2036 at 2051.368 kb on - strand, within EX28DRAFT_2036 at 2051.368 kb on - strand, within EX28DRAFT_2036 at 2051.397 kb on + strand, within EX28DRAFT_2036 at 2051.397 kb on + strand, within EX28DRAFT_2036 at 2051.398 kb on - strand, within EX28DRAFT_2036 at 2051.853 kb on - strand at 2051.853 kb on - strand at 2052.080 kb on - strand, within EX28DRAFT_2037 at 2052.307 kb on + strand, within EX28DRAFT_2037 at 2052.402 kb on - strand at 2052.523 kb on - strand at 2052.652 kb on - strand at 2052.736 kb on + strand, within EX28DRAFT_2038 at 2052.737 kb on - strand, within EX28DRAFT_2038
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,049,992 - EX28DRAFT_2035 0.41 -0.5 2,050,009 + EX28DRAFT_2035 0.43 -2.7 2,050,009 + EX28DRAFT_2035 0.43 +0.3 2,050,023 + EX28DRAFT_2035 0.44 -0.7 2,050,024 - EX28DRAFT_2035 0.44 +0.3 2,050,038 - EX28DRAFT_2035 0.45 -1.5 2,050,249 + EX28DRAFT_2035 0.64 +1.1 2,050,249 + EX28DRAFT_2035 0.64 -0.0 2,050,250 - EX28DRAFT_2035 0.64 -0.4 2,050,253 - EX28DRAFT_2035 0.64 +0.8 2,050,262 + EX28DRAFT_2035 0.65 -0.6 2,050,263 - EX28DRAFT_2035 0.65 +0.8 2,050,265 - EX28DRAFT_2035 0.65 -0.5 2,050,265 - EX28DRAFT_2035 0.65 -1.2 2,050,350 + EX28DRAFT_2035 0.72 -0.3 2,050,444 + EX28DRAFT_2035 0.81 -0.9 2,050,447 + EX28DRAFT_2035 0.81 -0.5 2,050,447 + EX28DRAFT_2035 0.81 -1.6 2,050,447 + EX28DRAFT_2035 0.81 -0.7 2,050,448 - EX28DRAFT_2035 0.81 -0.2 2,050,492 - EX28DRAFT_2035 0.85 +0.7 2,050,492 - EX28DRAFT_2035 0.85 -0.6 2,050,594 - -0.2 2,050,657 + -0.3 2,050,657 + -0.4 2,050,657 + +0.5 2,050,657 + -2.1 2,050,658 - -0.3 2,050,658 - +0.2 2,050,658 - -0.0 2,050,673 - -1.0 2,050,744 - -0.1 2,050,759 + +1.4 2,050,759 + +1.0 2,050,760 - +0.4 2,050,760 - +0.3 2,050,810 + +0.0 2,050,811 - +0.5 2,050,927 - -0.0 2,050,960 + -0.4 2,050,961 - -2.0 2,050,961 - -2.7 2,050,964 + -0.0 2,050,965 - -0.1 2,050,972 + +0.3 2,050,983 + -0.0 2,051,062 - EX28DRAFT_2036 0.14 -1.1 2,051,368 - EX28DRAFT_2036 0.49 -0.6 2,051,368 - EX28DRAFT_2036 0.49 -0.1 2,051,397 + EX28DRAFT_2036 0.53 +0.2 2,051,397 + EX28DRAFT_2036 0.53 -0.2 2,051,398 - EX28DRAFT_2036 0.53 -0.7 2,051,853 - +0.8 2,051,853 - -0.0 2,052,080 - EX28DRAFT_2037 0.44 -0.9 2,052,307 + EX28DRAFT_2037 0.81 -0.4 2,052,402 - +2.0 2,052,523 - +0.9 2,052,652 - -0.2 2,052,736 + EX28DRAFT_2038 0.12 -0.3 2,052,737 - EX28DRAFT_2038 0.12 +1.1
Or see this region's nucleotide sequence