Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2035

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2033 and EX28DRAFT_2034 are separated by 36 nucleotidesEX28DRAFT_2034 and EX28DRAFT_2035 are separated by 123 nucleotidesEX28DRAFT_2035 and EX28DRAFT_2036 are separated by 275 nucleotides EX28DRAFT_2033: EX28DRAFT_2033 - pyruvate formate-lyase 1-activating enzyme, at 2,048,097 to 2,048,837 _2033 EX28DRAFT_2034: EX28DRAFT_2034 - hypothetical protein, at 2,048,874 to 2,049,395 _2034 EX28DRAFT_2035: EX28DRAFT_2035 - Arabinose efflux permease, at 2,049,519 to 2,050,667 _2035 EX28DRAFT_2036: EX28DRAFT_2036 - DMSO reductase anchor subunit, at 2,050,943 to 2,051,806 _2036 Position (kb) 2049 2050 2051Strain fitness (log2 ratio) -2 -1 0 1at 2048.563 kb on - strand, within EX28DRAFT_2033at 2048.720 kb on + strand, within EX28DRAFT_2033at 2048.746 kb on - strand, within EX28DRAFT_2033at 2048.806 kb on + strandat 2048.806 kb on + strandat 2048.806 kb on + strandat 2048.807 kb on - strandat 2048.807 kb on - strandat 2048.815 kb on - strandat 2048.832 kb on + strandat 2048.833 kb on - strandat 2048.833 kb on - strandat 2048.833 kb on - strandat 2048.833 kb on - strandat 2048.833 kb on - strandat 2048.836 kb on - strandat 2048.869 kb on - strandat 2048.869 kb on - strandat 2048.870 kb on + strandat 2048.875 kb on + strandat 2049.038 kb on + strand, within EX28DRAFT_2034at 2049.083 kb on - strand, within EX28DRAFT_2034at 2049.165 kb on - strand, within EX28DRAFT_2034at 2049.212 kb on + strand, within EX28DRAFT_2034at 2049.212 kb on + strand, within EX28DRAFT_2034at 2049.213 kb on - strand, within EX28DRAFT_2034at 2049.222 kb on - strand, within EX28DRAFT_2034at 2049.389 kb on + strandat 2049.390 kb on - strandat 2049.407 kb on + strandat 2049.408 kb on - strandat 2049.409 kb on + strandat 2049.410 kb on - strandat 2049.457 kb on + strandat 2049.458 kb on - strandat 2049.458 kb on - strandat 2049.458 kb on - strandat 2049.458 kb on - strandat 2049.461 kb on + strandat 2049.461 kb on + strandat 2049.470 kb on + strandat 2049.471 kb on - strandat 2049.512 kb on + strandat 2049.513 kb on - strandat 2049.570 kb on + strandat 2049.582 kb on - strandat 2049.589 kb on - strandat 2049.606 kb on - strandat 2049.613 kb on - strandat 2049.626 kb on - strandat 2049.626 kb on - strandat 2049.648 kb on - strand, within EX28DRAFT_2035at 2049.660 kb on + strand, within EX28DRAFT_2035at 2049.661 kb on - strand, within EX28DRAFT_2035at 2049.677 kb on + strand, within EX28DRAFT_2035at 2049.678 kb on - strand, within EX28DRAFT_2035at 2049.678 kb on - strand, within EX28DRAFT_2035at 2049.679 kb on + strand, within EX28DRAFT_2035at 2049.679 kb on + strand, within EX28DRAFT_2035at 2049.680 kb on - strand, within EX28DRAFT_2035at 2049.680 kb on - strand, within EX28DRAFT_2035at 2049.680 kb on - strand, within EX28DRAFT_2035at 2049.680 kb on - strand, within EX28DRAFT_2035at 2049.992 kb on - strand, within EX28DRAFT_2035at 2050.009 kb on + strand, within EX28DRAFT_2035at 2050.009 kb on + strand, within EX28DRAFT_2035at 2050.023 kb on + strand, within EX28DRAFT_2035at 2050.024 kb on - strand, within EX28DRAFT_2035at 2050.038 kb on - strand, within EX28DRAFT_2035at 2050.249 kb on + strand, within EX28DRAFT_2035at 2050.249 kb on + strand, within EX28DRAFT_2035at 2050.250 kb on - strand, within EX28DRAFT_2035at 2050.253 kb on - strand, within EX28DRAFT_2035at 2050.262 kb on + strand, within EX28DRAFT_2035at 2050.263 kb on - strand, within EX28DRAFT_2035at 2050.265 kb on - strand, within EX28DRAFT_2035at 2050.265 kb on - strand, within EX28DRAFT_2035at 2050.350 kb on + strand, within EX28DRAFT_2035at 2050.444 kb on + strand, within EX28DRAFT_2035at 2050.447 kb on + strand, within EX28DRAFT_2035at 2050.447 kb on + strand, within EX28DRAFT_2035at 2050.447 kb on + strand, within EX28DRAFT_2035at 2050.448 kb on - strand, within EX28DRAFT_2035at 2050.492 kb on - strand, within EX28DRAFT_2035at 2050.492 kb on - strand, within EX28DRAFT_2035at 2050.594 kb on - strandat 2050.657 kb on + strandat 2050.657 kb on + strandat 2050.657 kb on + strandat 2050.657 kb on + strandat 2050.658 kb on - strandat 2050.658 kb on - strandat 2050.658 kb on - strandat 2050.673 kb on - strandat 2050.744 kb on - strandat 2050.759 kb on + strandat 2050.759 kb on + strandat 2050.760 kb on - strandat 2050.760 kb on - strandat 2050.810 kb on + strandat 2050.811 kb on - strandat 2050.927 kb on - strandat 2050.960 kb on + strandat 2050.961 kb on - strandat 2050.961 kb on - strandat 2050.964 kb on + strandat 2050.965 kb on - strandat 2050.972 kb on + strandat 2050.983 kb on + strandat 2051.062 kb on - strand, within EX28DRAFT_2036at 2051.368 kb on - strand, within EX28DRAFT_2036at 2051.368 kb on - strand, within EX28DRAFT_2036at 2051.397 kb on + strand, within EX28DRAFT_2036at 2051.397 kb on + strand, within EX28DRAFT_2036at 2051.398 kb on - strand, within EX28DRAFT_2036

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,048,563 - EX28DRAFT_2033 0.63 +1.6
2,048,720 + EX28DRAFT_2033 0.84 +0.4
2,048,746 - EX28DRAFT_2033 0.88 +0.1
2,048,806 + +0.0
2,048,806 + +0.0
2,048,806 + -0.1
2,048,807 - +0.1
2,048,807 - +0.7
2,048,815 - +0.6
2,048,832 + -0.6
2,048,833 - -0.5
2,048,833 - -0.4
2,048,833 - -1.4
2,048,833 - -0.1
2,048,833 - -0.2
2,048,836 - -1.3
2,048,869 - +1.0
2,048,869 - -0.1
2,048,870 + -1.5
2,048,875 + -0.5
2,049,038 + EX28DRAFT_2034 0.31 +0.3
2,049,083 - EX28DRAFT_2034 0.40 -0.2
2,049,165 - EX28DRAFT_2034 0.56 -0.3
2,049,212 + EX28DRAFT_2034 0.65 +0.3
2,049,212 + EX28DRAFT_2034 0.65 +0.2
2,049,213 - EX28DRAFT_2034 0.65 -1.0
2,049,222 - EX28DRAFT_2034 0.67 +0.4
2,049,389 + -1.7
2,049,390 - +0.3
2,049,407 + +0.2
2,049,408 - -0.1
2,049,409 + +0.4
2,049,410 - +0.3
2,049,457 + +0.3
2,049,458 - +0.6
2,049,458 - +0.0
2,049,458 - -0.8
2,049,458 - +0.7
2,049,461 + -1.0
2,049,461 + -0.8
2,049,470 + -0.6
2,049,471 - +0.4
2,049,512 + -0.1
2,049,513 - +0.5
2,049,570 + +0.2
2,049,582 - -0.2
2,049,589 - +0.1
2,049,606 - +0.0
2,049,613 - -0.3
2,049,626 - -0.7
2,049,626 - -0.7
2,049,648 - EX28DRAFT_2035 0.11 -0.6
2,049,660 + EX28DRAFT_2035 0.12 +0.1
2,049,661 - EX28DRAFT_2035 0.12 -0.5
2,049,677 + EX28DRAFT_2035 0.14 +0.5
2,049,678 - EX28DRAFT_2035 0.14 -0.8
2,049,678 - EX28DRAFT_2035 0.14 +0.2
2,049,679 + EX28DRAFT_2035 0.14 -0.2
2,049,679 + EX28DRAFT_2035 0.14 -1.1
2,049,680 - EX28DRAFT_2035 0.14 -1.8
2,049,680 - EX28DRAFT_2035 0.14 -0.1
2,049,680 - EX28DRAFT_2035 0.14 -0.2
2,049,680 - EX28DRAFT_2035 0.14 +0.2
2,049,992 - EX28DRAFT_2035 0.41 -0.5
2,050,009 + EX28DRAFT_2035 0.43 -2.7
2,050,009 + EX28DRAFT_2035 0.43 +0.3
2,050,023 + EX28DRAFT_2035 0.44 -0.7
2,050,024 - EX28DRAFT_2035 0.44 +0.3
2,050,038 - EX28DRAFT_2035 0.45 -1.5
2,050,249 + EX28DRAFT_2035 0.64 +1.1
2,050,249 + EX28DRAFT_2035 0.64 -0.0
2,050,250 - EX28DRAFT_2035 0.64 -0.4
2,050,253 - EX28DRAFT_2035 0.64 +0.8
2,050,262 + EX28DRAFT_2035 0.65 -0.6
2,050,263 - EX28DRAFT_2035 0.65 +0.8
2,050,265 - EX28DRAFT_2035 0.65 -0.5
2,050,265 - EX28DRAFT_2035 0.65 -1.2
2,050,350 + EX28DRAFT_2035 0.72 -0.3
2,050,444 + EX28DRAFT_2035 0.81 -0.9
2,050,447 + EX28DRAFT_2035 0.81 -0.5
2,050,447 + EX28DRAFT_2035 0.81 -1.6
2,050,447 + EX28DRAFT_2035 0.81 -0.7
2,050,448 - EX28DRAFT_2035 0.81 -0.2
2,050,492 - EX28DRAFT_2035 0.85 +0.7
2,050,492 - EX28DRAFT_2035 0.85 -0.6
2,050,594 - -0.2
2,050,657 + -0.3
2,050,657 + -0.4
2,050,657 + +0.5
2,050,657 + -2.1
2,050,658 - -0.3
2,050,658 - +0.2
2,050,658 - -0.0
2,050,673 - -1.0
2,050,744 - -0.1
2,050,759 + +1.4
2,050,759 + +1.0
2,050,760 - +0.4
2,050,760 - +0.3
2,050,810 + +0.0
2,050,811 - +0.5
2,050,927 - -0.0
2,050,960 + -0.4
2,050,961 - -2.0
2,050,961 - -2.7
2,050,964 + -0.0
2,050,965 - -0.1
2,050,972 + +0.3
2,050,983 + -0.0
2,051,062 - EX28DRAFT_2036 0.14 -1.1
2,051,368 - EX28DRAFT_2036 0.49 -0.6
2,051,368 - EX28DRAFT_2036 0.49 -0.1
2,051,397 + EX28DRAFT_2036 0.53 +0.2
2,051,397 + EX28DRAFT_2036 0.53 -0.2
2,051,398 - EX28DRAFT_2036 0.53 -0.7

Or see this region's nucleotide sequence