Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1928 and EX28DRAFT_1929 are separated by 100 nucleotides EX28DRAFT_1929 and EX28DRAFT_1930 are separated by 1 nucleotides EX28DRAFT_1930 and EX28DRAFT_1931 are separated by 159 nucleotides EX28DRAFT_1931 and EX28DRAFT_1932 are separated by 60 nucleotides
EX28DRAFT_1928: EX28DRAFT_1928 - transcriptional regulator, HxlR family, at 1,936,126 to 1,936,485
_1928
EX28DRAFT_1929: EX28DRAFT_1929 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,936,586 to 1,937,335
_1929
EX28DRAFT_1930: EX28DRAFT_1930 - Uncharacterized membrane-associated protein, at 1,937,337 to 1,937,840
_1930
EX28DRAFT_1931: EX28DRAFT_1931 - RNA, at 1,938,000 to 1,938,169
_1931
EX28DRAFT_1932: EX28DRAFT_1932 - Mg/Co/Ni transporter MgtE (contains CBS domain), at 1,938,230 to 1,939,231
_1932
Position (kb) 1937
1938 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1936.437 kb on + strand, within EX28DRAFT_1928 at 1936.437 kb on + strand, within EX28DRAFT_1928 at 1936.437 kb on + strand, within EX28DRAFT_1928 at 1936.438 kb on - strand, within EX28DRAFT_1928 at 1936.439 kb on + strand, within EX28DRAFT_1928 at 1936.440 kb on - strand, within EX28DRAFT_1928 at 1936.549 kb on + strand at 1936.549 kb on + strand at 1936.549 kb on + strand at 1936.550 kb on - strand at 1936.550 kb on - strand at 1936.550 kb on - strand at 1936.551 kb on + strand at 1936.552 kb on - strand at 1936.603 kb on + strand at 1936.603 kb on + strand at 1936.603 kb on + strand at 1936.604 kb on - strand at 1936.607 kb on + strand at 1936.609 kb on + strand at 1936.609 kb on + strand at 1936.609 kb on + strand at 1936.610 kb on - strand at 1936.729 kb on + strand, within EX28DRAFT_1929 at 1936.730 kb on - strand, within EX28DRAFT_1929 at 1936.730 kb on - strand, within EX28DRAFT_1929 at 1936.730 kb on - strand, within EX28DRAFT_1929 at 1936.938 kb on + strand, within EX28DRAFT_1929 at 1937.034 kb on - strand, within EX28DRAFT_1929 at 1937.034 kb on - strand, within EX28DRAFT_1929 at 1937.285 kb on + strand at 1937.286 kb on - strand at 1937.371 kb on + strand at 1937.371 kb on + strand at 1937.372 kb on - strand at 1937.414 kb on - strand, within EX28DRAFT_1930 at 1937.465 kb on - strand, within EX28DRAFT_1930 at 1937.493 kb on - strand, within EX28DRAFT_1930 at 1937.611 kb on + strand, within EX28DRAFT_1930 at 1937.611 kb on + strand, within EX28DRAFT_1930 at 1937.643 kb on + strand, within EX28DRAFT_1930 at 1937.743 kb on - strand, within EX28DRAFT_1930 at 1937.860 kb on + strand at 1937.940 kb on - strand at 1937.976 kb on - strand at 1937.981 kb on + strand at 1937.982 kb on - strand at 1938.052 kb on + strand, within EX28DRAFT_1931 at 1938.111 kb on + strand, within EX28DRAFT_1931 at 1938.112 kb on - strand, within EX28DRAFT_1931 at 1938.113 kb on + strand, within EX28DRAFT_1931 at 1938.137 kb on + strand, within EX28DRAFT_1931 at 1938.230 kb on - strand at 1938.288 kb on - strand at 1938.767 kb on + strand, within EX28DRAFT_1932 at 1938.832 kb on + strand, within EX28DRAFT_1932
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,936,437 + EX28DRAFT_1928 0.86 +0.2 1,936,437 + EX28DRAFT_1928 0.86 -0.1 1,936,437 + EX28DRAFT_1928 0.86 -0.7 1,936,438 - EX28DRAFT_1928 0.87 -0.2 1,936,439 + EX28DRAFT_1928 0.87 -0.3 1,936,440 - EX28DRAFT_1928 0.87 +0.0 1,936,549 + -2.9 1,936,549 + +0.3 1,936,549 + -0.6 1,936,550 - -1.0 1,936,550 - -0.7 1,936,550 - +0.2 1,936,551 + -0.1 1,936,552 - -0.5 1,936,603 + -0.0 1,936,603 + +0.5 1,936,603 + -0.8 1,936,604 - +0.2 1,936,607 + +0.0 1,936,609 + -0.1 1,936,609 + +1.3 1,936,609 + +0.1 1,936,610 - +0.3 1,936,729 + EX28DRAFT_1929 0.19 -0.3 1,936,730 - EX28DRAFT_1929 0.19 -2.0 1,936,730 - EX28DRAFT_1929 0.19 +0.3 1,936,730 - EX28DRAFT_1929 0.19 -1.4 1,936,938 + EX28DRAFT_1929 0.47 -0.1 1,937,034 - EX28DRAFT_1929 0.60 -1.2 1,937,034 - EX28DRAFT_1929 0.60 +0.0 1,937,285 + -1.4 1,937,286 - -0.1 1,937,371 + -0.2 1,937,371 + -0.3 1,937,372 - -1.5 1,937,414 - EX28DRAFT_1930 0.15 +0.6 1,937,465 - EX28DRAFT_1930 0.25 +0.2 1,937,493 - EX28DRAFT_1930 0.31 +0.4 1,937,611 + EX28DRAFT_1930 0.54 -1.0 1,937,611 + EX28DRAFT_1930 0.54 +0.5 1,937,643 + EX28DRAFT_1930 0.61 +0.5 1,937,743 - EX28DRAFT_1930 0.81 +0.2 1,937,860 + +0.3 1,937,940 - -0.9 1,937,976 - +0.0 1,937,981 + +0.3 1,937,982 - -0.5 1,938,052 + EX28DRAFT_1931 0.31 +0.1 1,938,111 + EX28DRAFT_1931 0.65 +0.2 1,938,112 - EX28DRAFT_1931 0.66 -0.5 1,938,113 + EX28DRAFT_1931 0.66 -0.4 1,938,137 + EX28DRAFT_1931 0.81 -2.4 1,938,230 - +0.7 1,938,288 - +0.9 1,938,767 + EX28DRAFT_1932 0.54 -0.8 1,938,832 + EX28DRAFT_1932 0.60 -0.3
Or see this region's nucleotide sequence