Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1926 and EX28DRAFT_1927 are separated by 125 nucleotides EX28DRAFT_1927 and EX28DRAFT_1928 are separated by 1 nucleotides EX28DRAFT_1928 and EX28DRAFT_1929 are separated by 100 nucleotides EX28DRAFT_1929 and EX28DRAFT_1930 are separated by 1 nucleotides
EX28DRAFT_1926: EX28DRAFT_1926 - transcriptional regulator, HxlR family, at 1,934,761 to 1,935,204
_1926
EX28DRAFT_1927: EX28DRAFT_1927 - Short-chain dehydrogenases of various substrate specificities, at 1,935,330 to 1,936,124
_1927
EX28DRAFT_1928: EX28DRAFT_1928 - transcriptional regulator, HxlR family, at 1,936,126 to 1,936,485
_1928
EX28DRAFT_1929: EX28DRAFT_1929 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,936,586 to 1,937,335
_1929
EX28DRAFT_1930: EX28DRAFT_1930 - Uncharacterized membrane-associated protein, at 1,937,337 to 1,937,840
_1930
Position (kb)
1936
1937 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1935.322 kb on - strand at 1935.581 kb on + strand, within EX28DRAFT_1927 at 1935.654 kb on - strand, within EX28DRAFT_1927 at 1935.654 kb on - strand, within EX28DRAFT_1927 at 1935.657 kb on - strand, within EX28DRAFT_1927 at 1935.694 kb on - strand, within EX28DRAFT_1927 at 1935.789 kb on + strand, within EX28DRAFT_1927 at 1935.801 kb on - strand, within EX28DRAFT_1927 at 1935.965 kb on + strand, within EX28DRAFT_1927 at 1936.122 kb on + strand at 1936.437 kb on + strand, within EX28DRAFT_1928 at 1936.437 kb on + strand, within EX28DRAFT_1928 at 1936.437 kb on + strand, within EX28DRAFT_1928 at 1936.438 kb on - strand, within EX28DRAFT_1928 at 1936.439 kb on + strand, within EX28DRAFT_1928 at 1936.440 kb on - strand, within EX28DRAFT_1928 at 1936.549 kb on + strand at 1936.549 kb on + strand at 1936.549 kb on + strand at 1936.550 kb on - strand at 1936.550 kb on - strand at 1936.550 kb on - strand at 1936.551 kb on + strand at 1936.552 kb on - strand at 1936.603 kb on + strand at 1936.603 kb on + strand at 1936.603 kb on + strand at 1936.604 kb on - strand at 1936.607 kb on + strand at 1936.609 kb on + strand at 1936.609 kb on + strand at 1936.609 kb on + strand at 1936.610 kb on - strand at 1936.729 kb on + strand, within EX28DRAFT_1929 at 1936.730 kb on - strand, within EX28DRAFT_1929 at 1936.730 kb on - strand, within EX28DRAFT_1929 at 1936.730 kb on - strand, within EX28DRAFT_1929 at 1936.938 kb on + strand, within EX28DRAFT_1929 at 1937.034 kb on - strand, within EX28DRAFT_1929 at 1937.034 kb on - strand, within EX28DRAFT_1929 at 1937.285 kb on + strand at 1937.286 kb on - strand at 1937.371 kb on + strand at 1937.371 kb on + strand at 1937.372 kb on - strand at 1937.414 kb on - strand, within EX28DRAFT_1930 at 1937.465 kb on - strand, within EX28DRAFT_1930
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,935,322 - +0.4 1,935,581 + EX28DRAFT_1927 0.32 -0.6 1,935,654 - EX28DRAFT_1927 0.41 -0.1 1,935,654 - EX28DRAFT_1927 0.41 +0.4 1,935,657 - EX28DRAFT_1927 0.41 -0.5 1,935,694 - EX28DRAFT_1927 0.46 +0.1 1,935,789 + EX28DRAFT_1927 0.58 +1.4 1,935,801 - EX28DRAFT_1927 0.59 -1.6 1,935,965 + EX28DRAFT_1927 0.80 +0.9 1,936,122 + -0.0 1,936,437 + EX28DRAFT_1928 0.86 +0.2 1,936,437 + EX28DRAFT_1928 0.86 -0.1 1,936,437 + EX28DRAFT_1928 0.86 -0.7 1,936,438 - EX28DRAFT_1928 0.87 -0.2 1,936,439 + EX28DRAFT_1928 0.87 -0.3 1,936,440 - EX28DRAFT_1928 0.87 +0.0 1,936,549 + -2.9 1,936,549 + +0.3 1,936,549 + -0.6 1,936,550 - -1.0 1,936,550 - -0.7 1,936,550 - +0.2 1,936,551 + -0.1 1,936,552 - -0.5 1,936,603 + -0.0 1,936,603 + +0.5 1,936,603 + -0.8 1,936,604 - +0.2 1,936,607 + +0.0 1,936,609 + -0.1 1,936,609 + +1.3 1,936,609 + +0.1 1,936,610 - +0.3 1,936,729 + EX28DRAFT_1929 0.19 -0.3 1,936,730 - EX28DRAFT_1929 0.19 -2.0 1,936,730 - EX28DRAFT_1929 0.19 +0.3 1,936,730 - EX28DRAFT_1929 0.19 -1.4 1,936,938 + EX28DRAFT_1929 0.47 -0.1 1,937,034 - EX28DRAFT_1929 0.60 -1.2 1,937,034 - EX28DRAFT_1929 0.60 +0.0 1,937,285 + -1.4 1,937,286 - -0.1 1,937,371 + -0.2 1,937,371 + -0.3 1,937,372 - -1.5 1,937,414 - EX28DRAFT_1930 0.15 +0.6 1,937,465 - EX28DRAFT_1930 0.25 +0.2
Or see this region's nucleotide sequence