Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1634 and EX28DRAFT_1635 are separated by 42 nucleotides EX28DRAFT_1635 and EX28DRAFT_1636 are separated by 93 nucleotides EX28DRAFT_1636 and EX28DRAFT_1637 are separated by 255 nucleotides EX28DRAFT_1637 and EX28DRAFT_1638 are separated by 199 nucleotides
EX28DRAFT_1634: EX28DRAFT_1634 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,652,243 to 1,652,914
_1634
EX28DRAFT_1635: EX28DRAFT_1635 - Predicted periplasmic protein, at 1,652,957 to 1,653,280
_1635
EX28DRAFT_1636: EX28DRAFT_1636 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 1,653,374 to 1,654,498
_1636
EX28DRAFT_1637: EX28DRAFT_1637 - Outer membrane lipoprotein, at 1,654,754 to 1,655,221
_1637
EX28DRAFT_1638: EX28DRAFT_1638 - diguanylate cyclase (GGDEF) domain, at 1,655,421 to 1,656,782
_1638
Position (kb)
1653
1654
1655 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1653.012 kb on + strand, within EX28DRAFT_1635 at 1653.048 kb on + strand, within EX28DRAFT_1635 at 1653.048 kb on + strand, within EX28DRAFT_1635 at 1653.048 kb on + strand, within EX28DRAFT_1635 at 1653.061 kb on + strand, within EX28DRAFT_1635 at 1653.062 kb on - strand, within EX28DRAFT_1635 at 1653.118 kb on - strand, within EX28DRAFT_1635 at 1653.183 kb on + strand, within EX28DRAFT_1635 at 1653.223 kb on + strand, within EX28DRAFT_1635 at 1653.224 kb on - strand, within EX28DRAFT_1635 at 1653.225 kb on + strand, within EX28DRAFT_1635 at 1653.226 kb on - strand, within EX28DRAFT_1635 at 1653.346 kb on - strand at 1653.386 kb on - strand at 1653.816 kb on - strand, within EX28DRAFT_1636 at 1653.816 kb on - strand, within EX28DRAFT_1636 at 1653.880 kb on - strand, within EX28DRAFT_1636 at 1653.880 kb on - strand, within EX28DRAFT_1636 at 1653.923 kb on - strand, within EX28DRAFT_1636 at 1654.109 kb on + strand, within EX28DRAFT_1636 at 1654.112 kb on + strand, within EX28DRAFT_1636 at 1654.445 kb on + strand at 1654.445 kb on + strand at 1654.446 kb on - strand at 1654.483 kb on - strand at 1654.510 kb on - strand at 1654.581 kb on + strand at 1654.619 kb on - strand at 1654.628 kb on + strand at 1654.655 kb on - strand at 1654.660 kb on + strand at 1654.671 kb on + strand at 1654.671 kb on + strand at 1654.672 kb on - strand at 1654.678 kb on + strand at 1654.678 kb on + strand at 1654.678 kb on + strand at 1654.679 kb on - strand at 1654.689 kb on - strand at 1654.697 kb on + strand at 1654.697 kb on + strand at 1654.698 kb on - strand at 1654.698 kb on - strand at 1654.702 kb on + strand at 1654.767 kb on + strand at 1654.877 kb on + strand, within EX28DRAFT_1637 at 1654.877 kb on + strand, within EX28DRAFT_1637 at 1654.878 kb on - strand, within EX28DRAFT_1637 at 1654.906 kb on - strand, within EX28DRAFT_1637 at 1654.979 kb on - strand, within EX28DRAFT_1637 at 1655.088 kb on + strand, within EX28DRAFT_1637 at 1655.088 kb on + strand, within EX28DRAFT_1637 at 1655.133 kb on + strand, within EX28DRAFT_1637 at 1655.134 kb on - strand, within EX28DRAFT_1637 at 1655.223 kb on + strand at 1655.223 kb on + strand at 1655.312 kb on + strand at 1655.327 kb on - strand at 1655.350 kb on + strand at 1655.401 kb on + strand at 1655.419 kb on - strand at 1655.420 kb on + strand at 1655.421 kb on - strand at 1655.421 kb on - strand at 1655.424 kb on + strand at 1655.425 kb on - strand at 1655.425 kb on - strand at 1655.454 kb on + strand at 1655.455 kb on - strand at 1655.478 kb on - strand at 1655.478 kb on - strand at 1655.497 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,653,012 + EX28DRAFT_1635 0.17 +0.1 1,653,048 + EX28DRAFT_1635 0.28 +0.9 1,653,048 + EX28DRAFT_1635 0.28 -0.4 1,653,048 + EX28DRAFT_1635 0.28 -0.7 1,653,061 + EX28DRAFT_1635 0.32 +0.6 1,653,062 - EX28DRAFT_1635 0.32 -1.1 1,653,118 - EX28DRAFT_1635 0.50 +0.4 1,653,183 + EX28DRAFT_1635 0.70 -0.3 1,653,223 + EX28DRAFT_1635 0.82 -0.1 1,653,224 - EX28DRAFT_1635 0.82 +0.5 1,653,225 + EX28DRAFT_1635 0.83 +1.1 1,653,226 - EX28DRAFT_1635 0.83 -0.4 1,653,346 - +0.6 1,653,386 - +0.4 1,653,816 - EX28DRAFT_1636 0.39 -0.9 1,653,816 - EX28DRAFT_1636 0.39 -0.8 1,653,880 - EX28DRAFT_1636 0.45 -0.6 1,653,880 - EX28DRAFT_1636 0.45 -1.0 1,653,923 - EX28DRAFT_1636 0.49 -2.6 1,654,109 + EX28DRAFT_1636 0.65 -1.1 1,654,112 + EX28DRAFT_1636 0.66 -0.3 1,654,445 + -0.8 1,654,445 + -0.3 1,654,446 - -0.8 1,654,483 - -1.1 1,654,510 - -0.0 1,654,581 + +0.8 1,654,619 - +0.1 1,654,628 + +0.4 1,654,655 - -0.1 1,654,660 + +0.3 1,654,671 + -1.0 1,654,671 + -0.3 1,654,672 - +0.5 1,654,678 + +1.5 1,654,678 + +0.1 1,654,678 + -0.8 1,654,679 - -1.1 1,654,689 - -0.1 1,654,697 + -0.1 1,654,697 + +1.1 1,654,698 - +1.3 1,654,698 - -0.3 1,654,702 + -0.6 1,654,767 + +0.5 1,654,877 + EX28DRAFT_1637 0.26 +0.1 1,654,877 + EX28DRAFT_1637 0.26 +0.5 1,654,878 - EX28DRAFT_1637 0.26 +0.6 1,654,906 - EX28DRAFT_1637 0.32 -1.3 1,654,979 - EX28DRAFT_1637 0.48 +0.0 1,655,088 + EX28DRAFT_1637 0.71 -0.1 1,655,088 + EX28DRAFT_1637 0.71 -0.2 1,655,133 + EX28DRAFT_1637 0.81 -0.5 1,655,134 - EX28DRAFT_1637 0.81 +0.1 1,655,223 + -0.1 1,655,223 + +0.2 1,655,312 + -2.9 1,655,327 - +0.4 1,655,350 + -0.5 1,655,401 + +0.0 1,655,419 - +0.0 1,655,420 + -0.1 1,655,421 - -0.2 1,655,421 - -1.5 1,655,424 + -0.9 1,655,425 - -0.1 1,655,425 - -0.7 1,655,454 + +0.5 1,655,455 - -0.2 1,655,478 - +0.2 1,655,478 - +0.7 1,655,497 + +0.5
Or see this region's nucleotide sequence