Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1592

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1590 and EX28DRAFT_1591 are separated by 397 nucleotidesEX28DRAFT_1591 and EX28DRAFT_1592 are separated by 192 nucleotidesEX28DRAFT_1592 and EX28DRAFT_1593 are separated by 326 nucleotidesEX28DRAFT_1593 and EX28DRAFT_1594 are separated by 119 nucleotides EX28DRAFT_1590: EX28DRAFT_1590 - hypothetical protein, at 1,607,627 to 1,607,863 _1590 EX28DRAFT_1591: EX28DRAFT_1591 - hypothetical protein, at 1,608,261 to 1,608,536 _1591 EX28DRAFT_1592: EX28DRAFT_1592 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 1,608,729 to 1,609,637 _1592 EX28DRAFT_1593: EX28DRAFT_1593 - hypothetical protein, at 1,609,964 to 1,610,182 _1593 EX28DRAFT_1594: EX28DRAFT_1594 - phage replication protein P, at 1,610,302 to 1,610,988 _1594 Position (kb) 1608 1609 1610Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1607.893 kb on - strandat 1607.968 kb on - strandat 1608.042 kb on + strandat 1608.083 kb on - strandat 1608.242 kb on + strandat 1608.343 kb on - strand, within EX28DRAFT_1591at 1608.343 kb on - strand, within EX28DRAFT_1591at 1608.372 kb on - strand, within EX28DRAFT_1591at 1608.453 kb on + strand, within EX28DRAFT_1591at 1608.834 kb on + strand, within EX28DRAFT_1592at 1608.893 kb on + strand, within EX28DRAFT_1592at 1608.959 kb on - strand, within EX28DRAFT_1592at 1608.962 kb on + strand, within EX28DRAFT_1592at 1608.962 kb on + strand, within EX28DRAFT_1592at 1609.170 kb on + strand, within EX28DRAFT_1592at 1609.171 kb on - strand, within EX28DRAFT_1592at 1609.253 kb on + strand, within EX28DRAFT_1592at 1609.254 kb on - strand, within EX28DRAFT_1592at 1609.254 kb on - strand, within EX28DRAFT_1592at 1609.259 kb on - strand, within EX28DRAFT_1592at 1609.259 kb on - strand, within EX28DRAFT_1592at 1609.268 kb on - strand, within EX28DRAFT_1592at 1609.389 kb on + strand, within EX28DRAFT_1592at 1609.430 kb on + strand, within EX28DRAFT_1592at 1609.430 kb on + strand, within EX28DRAFT_1592at 1609.431 kb on - strand, within EX28DRAFT_1592at 1609.431 kb on - strand, within EX28DRAFT_1592at 1609.461 kb on + strand, within EX28DRAFT_1592at 1609.466 kb on + strand, within EX28DRAFT_1592at 1609.466 kb on + strand, within EX28DRAFT_1592at 1609.466 kb on + strand, within EX28DRAFT_1592at 1609.466 kb on + strand, within EX28DRAFT_1592at 1609.466 kb on + strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.467 kb on - strand, within EX28DRAFT_1592at 1609.470 kb on + strand, within EX28DRAFT_1592at 1609.470 kb on + strand, within EX28DRAFT_1592at 1609.470 kb on + strand, within EX28DRAFT_1592at 1609.470 kb on + strand, within EX28DRAFT_1592at 1609.470 kb on + strand, within EX28DRAFT_1592at 1609.471 kb on - strand, within EX28DRAFT_1592at 1609.471 kb on - strand, within EX28DRAFT_1592at 1609.471 kb on - strand, within EX28DRAFT_1592at 1609.471 kb on - strand, within EX28DRAFT_1592at 1609.471 kb on - strand, within EX28DRAFT_1592at 1609.473 kb on - strand, within EX28DRAFT_1592at 1609.473 kb on - strand, within EX28DRAFT_1592at 1609.478 kb on + strand, within EX28DRAFT_1592at 1609.479 kb on - strand, within EX28DRAFT_1592at 1609.479 kb on - strand, within EX28DRAFT_1592at 1609.489 kb on + strand, within EX28DRAFT_1592at 1609.527 kb on + strand, within EX28DRAFT_1592at 1609.527 kb on + strand, within EX28DRAFT_1592at 1609.527 kb on + strand, within EX28DRAFT_1592at 1609.527 kb on + strand, within EX28DRAFT_1592at 1609.528 kb on - strand, within EX28DRAFT_1592at 1609.530 kb on - strand, within EX28DRAFT_1592at 1609.536 kb on - strand, within EX28DRAFT_1592at 1609.575 kb on + strandat 1609.576 kb on - strandat 1609.704 kb on + strandat 1609.704 kb on + strandat 1609.705 kb on - strandat 1609.705 kb on - strandat 1609.722 kb on - strandat 1609.722 kb on - strandat 1609.748 kb on + strandat 1609.749 kb on - strandat 1609.749 kb on - strandat 1609.759 kb on - strandat 1609.774 kb on - strandat 1609.790 kb on + strandat 1609.833 kb on - strandat 1609.847 kb on - strandat 1609.854 kb on + strandat 1609.854 kb on + strandat 1609.896 kb on + strandat 1609.904 kb on - strandat 1609.904 kb on - strandat 1609.929 kb on - strandat 1609.930 kb on + strandat 1609.953 kb on - strandat 1610.218 kb on - strandat 1610.227 kb on - strandat 1610.255 kb on - strandat 1610.267 kb on + strandat 1610.267 kb on + strandat 1610.272 kb on + strandat 1610.273 kb on - strandat 1610.273 kb on - strandat 1610.303 kb on + strandat 1610.333 kb on + strandat 1610.446 kb on - strand, within EX28DRAFT_1594at 1610.527 kb on + strand, within EX28DRAFT_1594at 1610.527 kb on + strand, within EX28DRAFT_1594at 1610.527 kb on + strand, within EX28DRAFT_1594at 1610.527 kb on + strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.529 kb on + strand, within EX28DRAFT_1594at 1610.529 kb on + strand, within EX28DRAFT_1594at 1610.529 kb on + strand, within EX28DRAFT_1594at 1610.529 kb on + strand, within EX28DRAFT_1594at 1610.529 kb on + strand, within EX28DRAFT_1594at 1610.530 kb on - strand, within EX28DRAFT_1594at 1610.530 kb on - strand, within EX28DRAFT_1594at 1610.530 kb on - strand, within EX28DRAFT_1594

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,607,893 - -0.2
1,607,968 - +0.5
1,608,042 + -0.6
1,608,083 - -0.2
1,608,242 + -0.3
1,608,343 - EX28DRAFT_1591 0.30 +0.8
1,608,343 - EX28DRAFT_1591 0.30 +0.8
1,608,372 - EX28DRAFT_1591 0.40 +0.2
1,608,453 + EX28DRAFT_1591 0.70 -1.0
1,608,834 + EX28DRAFT_1592 0.12 +1.0
1,608,893 + EX28DRAFT_1592 0.18 -0.9
1,608,959 - EX28DRAFT_1592 0.25 +0.6
1,608,962 + EX28DRAFT_1592 0.26 +0.1
1,608,962 + EX28DRAFT_1592 0.26 -0.2
1,609,170 + EX28DRAFT_1592 0.49 -0.0
1,609,171 - EX28DRAFT_1592 0.49 +0.3
1,609,253 + EX28DRAFT_1592 0.58 +1.3
1,609,254 - EX28DRAFT_1592 0.58 +1.3
1,609,254 - EX28DRAFT_1592 0.58 +0.2
1,609,259 - EX28DRAFT_1592 0.58 +0.7
1,609,259 - EX28DRAFT_1592 0.58 +0.2
1,609,268 - EX28DRAFT_1592 0.59 -0.4
1,609,389 + EX28DRAFT_1592 0.73 -1.5
1,609,430 + EX28DRAFT_1592 0.77 +0.0
1,609,430 + EX28DRAFT_1592 0.77 +1.1
1,609,431 - EX28DRAFT_1592 0.77 +0.5
1,609,431 - EX28DRAFT_1592 0.77 +1.1
1,609,461 + EX28DRAFT_1592 0.81 +0.0
1,609,466 + EX28DRAFT_1592 0.81 -0.4
1,609,466 + EX28DRAFT_1592 0.81 -0.2
1,609,466 + EX28DRAFT_1592 0.81 +2.8
1,609,466 + EX28DRAFT_1592 0.81 +0.6
1,609,466 + EX28DRAFT_1592 0.81 +2.0
1,609,467 - EX28DRAFT_1592 0.81 +1.2
1,609,467 - EX28DRAFT_1592 0.81 -1.6
1,609,467 - EX28DRAFT_1592 0.81 +0.4
1,609,467 - EX28DRAFT_1592 0.81 -1.1
1,609,467 - EX28DRAFT_1592 0.81 +0.0
1,609,467 - EX28DRAFT_1592 0.81 -0.1
1,609,467 - EX28DRAFT_1592 0.81 -0.0
1,609,467 - EX28DRAFT_1592 0.81 +1.3
1,609,470 + EX28DRAFT_1592 0.82 -0.5
1,609,470 + EX28DRAFT_1592 0.82 -0.3
1,609,470 + EX28DRAFT_1592 0.82 -0.5
1,609,470 + EX28DRAFT_1592 0.82 -0.6
1,609,470 + EX28DRAFT_1592 0.82 +0.4
1,609,471 - EX28DRAFT_1592 0.82 +0.1
1,609,471 - EX28DRAFT_1592 0.82 +0.4
1,609,471 - EX28DRAFT_1592 0.82 -0.4
1,609,471 - EX28DRAFT_1592 0.82 +0.1
1,609,471 - EX28DRAFT_1592 0.82 +0.1
1,609,473 - EX28DRAFT_1592 0.82 +0.4
1,609,473 - EX28DRAFT_1592 0.82 -1.1
1,609,478 + EX28DRAFT_1592 0.82 -0.1
1,609,479 - EX28DRAFT_1592 0.83 -0.8
1,609,479 - EX28DRAFT_1592 0.83 -1.3
1,609,489 + EX28DRAFT_1592 0.84 -1.3
1,609,527 + EX28DRAFT_1592 0.88 +0.6
1,609,527 + EX28DRAFT_1592 0.88 +0.1
1,609,527 + EX28DRAFT_1592 0.88 -0.0
1,609,527 + EX28DRAFT_1592 0.88 +1.2
1,609,528 - EX28DRAFT_1592 0.88 -0.0
1,609,530 - EX28DRAFT_1592 0.88 +0.5
1,609,536 - EX28DRAFT_1592 0.89 +0.1
1,609,575 + -1.2
1,609,576 - -0.2
1,609,704 + +0.2
1,609,704 + -0.3
1,609,705 - -0.7
1,609,705 - +0.7
1,609,722 - -0.0
1,609,722 - -1.1
1,609,748 + +0.3
1,609,749 - +0.2
1,609,749 - +0.1
1,609,759 - -1.2
1,609,774 - +0.7
1,609,790 + +0.5
1,609,833 - +0.4
1,609,847 - +0.7
1,609,854 + +1.2
1,609,854 + +0.2
1,609,896 + -0.2
1,609,904 - -0.3
1,609,904 - -0.8
1,609,929 - -0.2
1,609,930 + -0.8
1,609,953 - -1.6
1,610,218 - -0.6
1,610,227 - -0.4
1,610,255 - -0.2
1,610,267 + +0.2
1,610,267 + +0.0
1,610,272 + +0.3
1,610,273 - +0.2
1,610,273 - -1.2
1,610,303 + -2.5
1,610,333 + +1.2
1,610,446 - EX28DRAFT_1594 0.21 -0.3
1,610,527 + EX28DRAFT_1594 0.33 -0.2
1,610,527 + EX28DRAFT_1594 0.33 -0.0
1,610,527 + EX28DRAFT_1594 0.33 +0.3
1,610,527 + EX28DRAFT_1594 0.33 +0.7
1,610,528 - EX28DRAFT_1594 0.33 -0.1
1,610,528 - EX28DRAFT_1594 0.33 +0.4
1,610,528 - EX28DRAFT_1594 0.33 +0.4
1,610,528 - EX28DRAFT_1594 0.33 +0.7
1,610,528 - EX28DRAFT_1594 0.33 +0.9
1,610,528 - EX28DRAFT_1594 0.33 -0.1
1,610,528 - EX28DRAFT_1594 0.33 +0.1
1,610,528 - EX28DRAFT_1594 0.33 +0.1
1,610,529 + EX28DRAFT_1594 0.33 -0.7
1,610,529 + EX28DRAFT_1594 0.33 +0.2
1,610,529 + EX28DRAFT_1594 0.33 +0.8
1,610,529 + EX28DRAFT_1594 0.33 -0.8
1,610,529 + EX28DRAFT_1594 0.33 -0.7
1,610,530 - EX28DRAFT_1594 0.33 -0.7
1,610,530 - EX28DRAFT_1594 0.33 +0.1
1,610,530 - EX28DRAFT_1594 0.33 +0.1

Or see this region's nucleotide sequence