Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1590

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1589 and EX28DRAFT_1590 are separated by 17 nucleotidesEX28DRAFT_1590 and EX28DRAFT_1591 are separated by 397 nucleotidesEX28DRAFT_1591 and EX28DRAFT_1592 are separated by 192 nucleotides EX28DRAFT_1589: EX28DRAFT_1589 - Cellobiose phosphorylase, at 1,599,027 to 1,607,609 _1589 EX28DRAFT_1590: EX28DRAFT_1590 - hypothetical protein, at 1,607,627 to 1,607,863 _1590 EX28DRAFT_1591: EX28DRAFT_1591 - hypothetical protein, at 1,608,261 to 1,608,536 _1591 EX28DRAFT_1592: EX28DRAFT_1592 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 1,608,729 to 1,609,637 _1592 Position (kb) 1607 1608Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1606.742 kb on - strand, within EX28DRAFT_1589at 1606.778 kb on + strandat 1606.779 kb on - strandat 1606.933 kb on + strandat 1606.934 kb on - strandat 1607.044 kb on + strandat 1607.044 kb on + strandat 1607.045 kb on - strandat 1607.086 kb on - strandat 1607.097 kb on + strandat 1607.098 kb on - strandat 1607.130 kb on + strandat 1607.130 kb on + strandat 1607.130 kb on + strandat 1607.131 kb on - strandat 1607.131 kb on - strandat 1607.132 kb on + strandat 1607.133 kb on - strandat 1607.133 kb on - strandat 1607.133 kb on - strandat 1607.222 kb on - strandat 1607.275 kb on + strandat 1607.275 kb on + strandat 1607.276 kb on - strandat 1607.276 kb on - strandat 1607.293 kb on - strandat 1607.310 kb on - strandat 1607.389 kb on + strandat 1607.416 kb on + strandat 1607.416 kb on + strandat 1607.417 kb on - strandat 1607.417 kb on - strandat 1607.417 kb on - strandat 1607.417 kb on - strandat 1607.461 kb on - strandat 1607.482 kb on - strandat 1607.524 kb on + strandat 1607.525 kb on - strandat 1607.527 kb on + strandat 1607.528 kb on - strandat 1607.528 kb on - strandat 1607.528 kb on - strandat 1607.528 kb on - strandat 1607.528 kb on - strandat 1607.528 kb on - strandat 1607.528 kb on - strandat 1607.587 kb on + strandat 1607.587 kb on + strandat 1607.587 kb on + strandat 1607.588 kb on - strandat 1607.590 kb on + strandat 1607.591 kb on - strandat 1607.591 kb on - strandat 1607.617 kb on + strandat 1607.660 kb on - strand, within EX28DRAFT_1590at 1607.713 kb on + strand, within EX28DRAFT_1590at 1607.893 kb on - strandat 1607.968 kb on - strandat 1608.042 kb on + strandat 1608.083 kb on - strandat 1608.242 kb on + strandat 1608.343 kb on - strand, within EX28DRAFT_1591at 1608.343 kb on - strand, within EX28DRAFT_1591at 1608.372 kb on - strand, within EX28DRAFT_1591at 1608.453 kb on + strand, within EX28DRAFT_1591at 1608.834 kb on + strand, within EX28DRAFT_1592

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,606,742 - EX28DRAFT_1589 0.90 -1.3
1,606,778 + -0.6
1,606,779 - +0.0
1,606,933 + -0.1
1,606,934 - +0.4
1,607,044 + -0.6
1,607,044 + -0.3
1,607,045 - -0.1
1,607,086 - -0.3
1,607,097 + -0.3
1,607,098 - -0.9
1,607,130 + -0.1
1,607,130 + -0.2
1,607,130 + +0.0
1,607,131 - +0.2
1,607,131 - -0.4
1,607,132 + +0.0
1,607,133 - +0.6
1,607,133 - -0.4
1,607,133 - +0.4
1,607,222 - -1.7
1,607,275 + -0.1
1,607,275 + -0.5
1,607,276 - +0.4
1,607,276 - -0.2
1,607,293 - +1.5
1,607,310 - +0.4
1,607,389 + +0.4
1,607,416 + -0.0
1,607,416 + +0.3
1,607,417 - -0.4
1,607,417 - -1.2
1,607,417 - +0.3
1,607,417 - -0.5
1,607,461 - -1.3
1,607,482 - +0.3
1,607,524 + +0.1
1,607,525 - +0.5
1,607,527 + -0.1
1,607,528 - +2.9
1,607,528 - +1.9
1,607,528 - -0.5
1,607,528 - -0.9
1,607,528 - +0.3
1,607,528 - +0.1
1,607,528 - -1.4
1,607,587 + -0.3
1,607,587 + +0.1
1,607,587 + -1.2
1,607,588 - -1.5
1,607,590 + -2.1
1,607,591 - -1.1
1,607,591 - +0.4
1,607,617 + +0.2
1,607,660 - EX28DRAFT_1590 0.14 -0.5
1,607,713 + EX28DRAFT_1590 0.36 -2.1
1,607,893 - -0.2
1,607,968 - +0.5
1,608,042 + -0.6
1,608,083 - -0.2
1,608,242 + -0.3
1,608,343 - EX28DRAFT_1591 0.30 +0.8
1,608,343 - EX28DRAFT_1591 0.30 +0.8
1,608,372 - EX28DRAFT_1591 0.40 +0.2
1,608,453 + EX28DRAFT_1591 0.70 -1.0
1,608,834 + EX28DRAFT_1592 0.12 +1.0

Or see this region's nucleotide sequence