Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1589 and EX28DRAFT_1590 are separated by 17 nucleotides EX28DRAFT_1590 and EX28DRAFT_1591 are separated by 397 nucleotides EX28DRAFT_1591 and EX28DRAFT_1592 are separated by 192 nucleotides
EX28DRAFT_1589: EX28DRAFT_1589 - Cellobiose phosphorylase, at 1,599,027 to 1,607,609
_1589
EX28DRAFT_1590: EX28DRAFT_1590 - hypothetical protein, at 1,607,627 to 1,607,863
_1590
EX28DRAFT_1591: EX28DRAFT_1591 - hypothetical protein, at 1,608,261 to 1,608,536
_1591
EX28DRAFT_1592: EX28DRAFT_1592 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 1,608,729 to 1,609,637
_1592
Position (kb)
1607
1608 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1606.742 kb on - strand, within EX28DRAFT_1589 at 1606.778 kb on + strand at 1606.779 kb on - strand at 1606.933 kb on + strand at 1606.934 kb on - strand at 1607.044 kb on + strand at 1607.044 kb on + strand at 1607.045 kb on - strand at 1607.086 kb on - strand at 1607.097 kb on + strand at 1607.098 kb on - strand at 1607.130 kb on + strand at 1607.130 kb on + strand at 1607.130 kb on + strand at 1607.131 kb on - strand at 1607.131 kb on - strand at 1607.132 kb on + strand at 1607.133 kb on - strand at 1607.133 kb on - strand at 1607.133 kb on - strand at 1607.222 kb on - strand at 1607.275 kb on + strand at 1607.275 kb on + strand at 1607.276 kb on - strand at 1607.276 kb on - strand at 1607.293 kb on - strand at 1607.310 kb on - strand at 1607.389 kb on + strand at 1607.416 kb on + strand at 1607.416 kb on + strand at 1607.417 kb on - strand at 1607.417 kb on - strand at 1607.417 kb on - strand at 1607.417 kb on - strand at 1607.461 kb on - strand at 1607.482 kb on - strand at 1607.524 kb on + strand at 1607.525 kb on - strand at 1607.527 kb on + strand at 1607.528 kb on - strand at 1607.528 kb on - strand at 1607.528 kb on - strand at 1607.528 kb on - strand at 1607.528 kb on - strand at 1607.528 kb on - strand at 1607.528 kb on - strand at 1607.587 kb on + strand at 1607.587 kb on + strand at 1607.587 kb on + strand at 1607.588 kb on - strand at 1607.590 kb on + strand at 1607.591 kb on - strand at 1607.591 kb on - strand at 1607.617 kb on + strand at 1607.660 kb on - strand, within EX28DRAFT_1590 at 1607.713 kb on + strand, within EX28DRAFT_1590 at 1607.893 kb on - strand at 1607.968 kb on - strand at 1608.042 kb on + strand at 1608.083 kb on - strand at 1608.242 kb on + strand at 1608.343 kb on - strand, within EX28DRAFT_1591 at 1608.343 kb on - strand, within EX28DRAFT_1591 at 1608.372 kb on - strand, within EX28DRAFT_1591 at 1608.453 kb on + strand, within EX28DRAFT_1591 at 1608.834 kb on + strand, within EX28DRAFT_1592
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,606,742 - EX28DRAFT_1589 0.90 -1.3 1,606,778 + -0.6 1,606,779 - +0.0 1,606,933 + -0.1 1,606,934 - +0.4 1,607,044 + -0.6 1,607,044 + -0.3 1,607,045 - -0.1 1,607,086 - -0.3 1,607,097 + -0.3 1,607,098 - -0.9 1,607,130 + -0.1 1,607,130 + -0.2 1,607,130 + +0.0 1,607,131 - +0.2 1,607,131 - -0.4 1,607,132 + +0.0 1,607,133 - +0.6 1,607,133 - -0.4 1,607,133 - +0.4 1,607,222 - -1.7 1,607,275 + -0.1 1,607,275 + -0.5 1,607,276 - +0.4 1,607,276 - -0.2 1,607,293 - +1.5 1,607,310 - +0.4 1,607,389 + +0.4 1,607,416 + -0.0 1,607,416 + +0.3 1,607,417 - -0.4 1,607,417 - -1.2 1,607,417 - +0.3 1,607,417 - -0.5 1,607,461 - -1.3 1,607,482 - +0.3 1,607,524 + +0.1 1,607,525 - +0.5 1,607,527 + -0.1 1,607,528 - +2.9 1,607,528 - +1.9 1,607,528 - -0.5 1,607,528 - -0.9 1,607,528 - +0.3 1,607,528 - +0.1 1,607,528 - -1.4 1,607,587 + -0.3 1,607,587 + +0.1 1,607,587 + -1.2 1,607,588 - -1.5 1,607,590 + -2.1 1,607,591 - -1.1 1,607,591 - +0.4 1,607,617 + +0.2 1,607,660 - EX28DRAFT_1590 0.14 -0.5 1,607,713 + EX28DRAFT_1590 0.36 -2.1 1,607,893 - -0.2 1,607,968 - +0.5 1,608,042 + -0.6 1,608,083 - -0.2 1,608,242 + -0.3 1,608,343 - EX28DRAFT_1591 0.30 +0.8 1,608,343 - EX28DRAFT_1591 0.30 +0.8 1,608,372 - EX28DRAFT_1591 0.40 +0.2 1,608,453 + EX28DRAFT_1591 0.70 -1.0 1,608,834 + EX28DRAFT_1592 0.12 +1.0
Or see this region's nucleotide sequence