Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1516

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1514 and EX28DRAFT_1515 are separated by 77 nucleotidesEX28DRAFT_1515 and EX28DRAFT_1516 are separated by 29 nucleotidesEX28DRAFT_1516 and EX28DRAFT_1517 are separated by 124 nucleotidesEX28DRAFT_1517 and EX28DRAFT_1518 overlap by 4 nucleotides EX28DRAFT_1514: EX28DRAFT_1514 - phenazine biosynthesis protein PhzF family, at 1,528,213 to 1,529,106 _1514 EX28DRAFT_1515: EX28DRAFT_1515 - HNH endonuclease, at 1,529,184 to 1,529,531 _1515 EX28DRAFT_1516: EX28DRAFT_1516 - Outer membrane protein V, at 1,529,561 to 1,530,346 _1516 EX28DRAFT_1517: EX28DRAFT_1517 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,530,471 to 1,531,166 _1517 EX28DRAFT_1518: EX28DRAFT_1518 - Signal transduction histidine kinase, at 1,531,163 to 1,532,359 _1518 Position (kb) 1529 1530 1531Strain fitness (log2 ratio) -3 -2 -1 0 1at 1528.682 kb on + strand, within EX28DRAFT_1514at 1528.686 kb on + strand, within EX28DRAFT_1514at 1528.686 kb on + strand, within EX28DRAFT_1514at 1528.686 kb on + strand, within EX28DRAFT_1514at 1528.686 kb on + strand, within EX28DRAFT_1514at 1528.686 kb on + strand, within EX28DRAFT_1514at 1528.686 kb on + strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.687 kb on - strand, within EX28DRAFT_1514at 1528.695 kb on + strand, within EX28DRAFT_1514at 1528.772 kb on + strand, within EX28DRAFT_1514at 1528.773 kb on - strand, within EX28DRAFT_1514at 1528.819 kb on + strand, within EX28DRAFT_1514at 1528.825 kb on + strand, within EX28DRAFT_1514at 1528.825 kb on + strand, within EX28DRAFT_1514at 1528.826 kb on - strand, within EX28DRAFT_1514at 1528.826 kb on - strand, within EX28DRAFT_1514at 1528.826 kb on - strand, within EX28DRAFT_1514at 1528.826 kb on - strand, within EX28DRAFT_1514at 1528.826 kb on - strand, within EX28DRAFT_1514at 1528.878 kb on + strand, within EX28DRAFT_1514at 1528.879 kb on - strand, within EX28DRAFT_1514at 1529.147 kb on + strandat 1529.148 kb on - strandat 1529.173 kb on + strandat 1529.242 kb on + strand, within EX28DRAFT_1515at 1529.289 kb on + strand, within EX28DRAFT_1515at 1529.290 kb on - strand, within EX28DRAFT_1515at 1529.337 kb on - strand, within EX28DRAFT_1515at 1529.409 kb on + strand, within EX28DRAFT_1515at 1529.503 kb on + strandat 1529.529 kb on + strandat 1529.563 kb on - strandat 1529.651 kb on - strand, within EX28DRAFT_1516at 1529.653 kb on - strand, within EX28DRAFT_1516at 1529.724 kb on + strand, within EX28DRAFT_1516at 1529.724 kb on + strand, within EX28DRAFT_1516at 1529.725 kb on - strand, within EX28DRAFT_1516at 1529.858 kb on - strand, within EX28DRAFT_1516at 1529.893 kb on - strand, within EX28DRAFT_1516at 1530.094 kb on - strand, within EX28DRAFT_1516at 1530.320 kb on - strandat 1530.320 kb on - strandat 1530.320 kb on - strandat 1530.321 kb on + strandat 1530.321 kb on + strandat 1530.321 kb on + strandat 1530.321 kb on + strandat 1530.321 kb on + strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.322 kb on - strandat 1530.346 kb on + strandat 1530.346 kb on + strandat 1530.346 kb on + strandat 1530.347 kb on - strandat 1530.347 kb on - strandat 1530.411 kb on - strandat 1530.535 kb on - strandat 1530.622 kb on + strand, within EX28DRAFT_1517at 1530.622 kb on + strand, within EX28DRAFT_1517at 1530.684 kb on - strand, within EX28DRAFT_1517at 1530.684 kb on - strand, within EX28DRAFT_1517at 1530.768 kb on + strand, within EX28DRAFT_1517at 1530.768 kb on + strand, within EX28DRAFT_1517at 1530.768 kb on + strand, within EX28DRAFT_1517at 1530.769 kb on - strand, within EX28DRAFT_1517at 1530.947 kb on + strand, within EX28DRAFT_1517at 1531.015 kb on - strand, within EX28DRAFT_1517at 1531.018 kb on + strand, within EX28DRAFT_1517at 1531.018 kb on + strand, within EX28DRAFT_1517at 1531.077 kb on + strand, within EX28DRAFT_1517at 1531.078 kb on - strand, within EX28DRAFT_1517at 1531.079 kb on + strand, within EX28DRAFT_1517at 1531.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,528,682 + EX28DRAFT_1514 0.52 +0.4
1,528,686 + EX28DRAFT_1514 0.53 -0.5
1,528,686 + EX28DRAFT_1514 0.53 +0.5
1,528,686 + EX28DRAFT_1514 0.53 +1.0
1,528,686 + EX28DRAFT_1514 0.53 -0.0
1,528,686 + EX28DRAFT_1514 0.53 -1.6
1,528,686 + EX28DRAFT_1514 0.53 -0.1
1,528,687 - EX28DRAFT_1514 0.53 +0.4
1,528,687 - EX28DRAFT_1514 0.53 +0.1
1,528,687 - EX28DRAFT_1514 0.53 +0.9
1,528,687 - EX28DRAFT_1514 0.53 -0.2
1,528,687 - EX28DRAFT_1514 0.53 -0.1
1,528,687 - EX28DRAFT_1514 0.53 -0.1
1,528,687 - EX28DRAFT_1514 0.53 -3.1
1,528,687 - EX28DRAFT_1514 0.53 -0.5
1,528,695 + EX28DRAFT_1514 0.54 -0.2
1,528,772 + EX28DRAFT_1514 0.63 +0.5
1,528,773 - EX28DRAFT_1514 0.63 -0.5
1,528,819 + EX28DRAFT_1514 0.68 +0.5
1,528,825 + EX28DRAFT_1514 0.68 -1.9
1,528,825 + EX28DRAFT_1514 0.68 -1.3
1,528,826 - EX28DRAFT_1514 0.69 +1.1
1,528,826 - EX28DRAFT_1514 0.69 +0.6
1,528,826 - EX28DRAFT_1514 0.69 +0.4
1,528,826 - EX28DRAFT_1514 0.69 -0.4
1,528,826 - EX28DRAFT_1514 0.69 +0.5
1,528,878 + EX28DRAFT_1514 0.74 +0.1
1,528,879 - EX28DRAFT_1514 0.74 -0.0
1,529,147 + -0.1
1,529,148 - -0.2
1,529,173 + +0.6
1,529,242 + EX28DRAFT_1515 0.17 +0.2
1,529,289 + EX28DRAFT_1515 0.30 +0.8
1,529,290 - EX28DRAFT_1515 0.30 -0.7
1,529,337 - EX28DRAFT_1515 0.44 +0.2
1,529,409 + EX28DRAFT_1515 0.65 -0.1
1,529,503 + +0.4
1,529,529 + -0.7
1,529,563 - -0.4
1,529,651 - EX28DRAFT_1516 0.11 -0.7
1,529,653 - EX28DRAFT_1516 0.12 +0.2
1,529,724 + EX28DRAFT_1516 0.21 -0.2
1,529,724 + EX28DRAFT_1516 0.21 +0.3
1,529,725 - EX28DRAFT_1516 0.21 +0.3
1,529,858 - EX28DRAFT_1516 0.38 +0.8
1,529,893 - EX28DRAFT_1516 0.42 +0.8
1,530,094 - EX28DRAFT_1516 0.68 -0.6
1,530,320 - +0.1
1,530,320 - +0.1
1,530,320 - +0.4
1,530,321 + -0.0
1,530,321 + -0.4
1,530,321 + +0.3
1,530,321 + -1.6
1,530,321 + +0.1
1,530,322 - +0.1
1,530,322 - -0.3
1,530,322 - -1.4
1,530,322 - +0.2
1,530,322 - +0.1
1,530,322 - -0.5
1,530,322 - +0.2
1,530,322 - -0.3
1,530,346 + -0.2
1,530,346 + -0.4
1,530,346 + +1.7
1,530,347 - +0.1
1,530,347 - -0.2
1,530,411 - -0.2
1,530,535 - -0.0
1,530,622 + EX28DRAFT_1517 0.22 +0.4
1,530,622 + EX28DRAFT_1517 0.22 +0.7
1,530,684 - EX28DRAFT_1517 0.31 -1.1
1,530,684 - EX28DRAFT_1517 0.31 -0.1
1,530,768 + EX28DRAFT_1517 0.43 -0.6
1,530,768 + EX28DRAFT_1517 0.43 +0.7
1,530,768 + EX28DRAFT_1517 0.43 +1.3
1,530,769 - EX28DRAFT_1517 0.43 -0.7
1,530,947 + EX28DRAFT_1517 0.68 +0.1
1,531,015 - EX28DRAFT_1517 0.78 +0.2
1,531,018 + EX28DRAFT_1517 0.79 -1.7
1,531,018 + EX28DRAFT_1517 0.79 -1.7
1,531,077 + EX28DRAFT_1517 0.87 +0.3
1,531,078 - EX28DRAFT_1517 0.87 -0.8
1,531,079 + EX28DRAFT_1517 0.87 -0.0
1,531,169 - -0.6

Or see this region's nucleotide sequence