Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1475 and EX28DRAFT_1476 are separated by 100 nucleotides EX28DRAFT_1476 and EX28DRAFT_1477 are separated by 77 nucleotides
EX28DRAFT_1474: EX28DRAFT_1474 - AraC-type DNA-binding domain-containing proteins, at 1,490,022 to 1,490,372
_1474
EX28DRAFT_1475: EX28DRAFT_1475 - Transcriptional regulator, at 1,490,296 to 1,491,210
_1475
EX28DRAFT_1476: EX28DRAFT_1476 - Predicted amidohydrolase, at 1,491,311 to 1,492,291
_1476
EX28DRAFT_1477: EX28DRAFT_1477 - Uncharacterized protein conserved in bacteria, at 1,492,369 to 1,492,686
_1477
Position (kb)
1491
1492
1493 Strain fitness (log2 ratio)
-2
-1
0
1 at 1490.366 kb on - strand at 1490.366 kb on - strand at 1490.371 kb on - strand at 1490.545 kb on - strand, within EX28DRAFT_1475 at 1490.545 kb on - strand, within EX28DRAFT_1475 at 1490.612 kb on - strand, within EX28DRAFT_1475 at 1490.623 kb on + strand, within EX28DRAFT_1475 at 1490.748 kb on - strand, within EX28DRAFT_1475 at 1490.792 kb on - strand, within EX28DRAFT_1475 at 1490.792 kb on - strand, within EX28DRAFT_1475 at 1490.792 kb on - strand, within EX28DRAFT_1475 at 1490.886 kb on + strand, within EX28DRAFT_1475 at 1490.935 kb on - strand, within EX28DRAFT_1475 at 1490.976 kb on + strand, within EX28DRAFT_1475 at 1490.976 kb on + strand, within EX28DRAFT_1475 at 1491.078 kb on + strand, within EX28DRAFT_1475 at 1491.078 kb on + strand, within EX28DRAFT_1475 at 1491.078 kb on + strand, within EX28DRAFT_1475 at 1491.078 kb on + strand, within EX28DRAFT_1475 at 1491.078 kb on + strand, within EX28DRAFT_1475 at 1491.079 kb on - strand, within EX28DRAFT_1475 at 1491.079 kb on - strand, within EX28DRAFT_1475 at 1491.079 kb on - strand, within EX28DRAFT_1475 at 1491.158 kb on + strand at 1491.162 kb on + strand at 1491.163 kb on - strand at 1491.194 kb on - strand at 1491.255 kb on + strand at 1491.279 kb on - strand at 1491.279 kb on - strand at 1491.595 kb on + strand, within EX28DRAFT_1476 at 1491.596 kb on - strand, within EX28DRAFT_1476 at 1491.624 kb on - strand, within EX28DRAFT_1476 at 1491.632 kb on + strand, within EX28DRAFT_1476 at 1491.632 kb on + strand, within EX28DRAFT_1476 at 1491.632 kb on + strand, within EX28DRAFT_1476 at 1491.632 kb on + strand, within EX28DRAFT_1476 at 1491.633 kb on - strand, within EX28DRAFT_1476 at 1491.643 kb on + strand, within EX28DRAFT_1476 at 1491.643 kb on + strand, within EX28DRAFT_1476 at 1491.716 kb on - strand, within EX28DRAFT_1476 at 1492.012 kb on - strand, within EX28DRAFT_1476 at 1492.089 kb on - strand, within EX28DRAFT_1476 at 1492.166 kb on - strand, within EX28DRAFT_1476 at 1492.209 kb on + strand at 1492.209 kb on + strand at 1492.210 kb on - strand at 1492.210 kb on - strand at 1492.210 kb on - strand at 1492.219 kb on - strand at 1492.319 kb on + strand at 1492.399 kb on - strand at 1492.578 kb on + strand, within EX28DRAFT_1477 at 1492.854 kb on + strand at 1492.862 kb on - strand at 1492.876 kb on - strand at 1492.879 kb on + strand at 1492.891 kb on + strand at 1492.892 kb on - strand at 1492.919 kb on + strand at 1492.923 kb on + strand at 1492.965 kb on - strand at 1492.990 kb on - strand at 1492.990 kb on - strand at 1492.990 kb on - strand at 1492.990 kb on - strand at 1492.993 kb on - strand at 1493.002 kb on + strand at 1493.003 kb on - strand at 1493.159 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,490,366 - +0.6 1,490,366 - -0.4 1,490,371 - +0.2 1,490,545 - EX28DRAFT_1475 0.27 -0.1 1,490,545 - EX28DRAFT_1475 0.27 -0.4 1,490,612 - EX28DRAFT_1475 0.35 +0.0 1,490,623 + EX28DRAFT_1475 0.36 -0.2 1,490,748 - EX28DRAFT_1475 0.49 -0.5 1,490,792 - EX28DRAFT_1475 0.54 -0.8 1,490,792 - EX28DRAFT_1475 0.54 -0.4 1,490,792 - EX28DRAFT_1475 0.54 -0.7 1,490,886 + EX28DRAFT_1475 0.64 +0.5 1,490,935 - EX28DRAFT_1475 0.70 -0.2 1,490,976 + EX28DRAFT_1475 0.74 +0.2 1,490,976 + EX28DRAFT_1475 0.74 +0.2 1,491,078 + EX28DRAFT_1475 0.85 -0.4 1,491,078 + EX28DRAFT_1475 0.85 -0.2 1,491,078 + EX28DRAFT_1475 0.85 -0.4 1,491,078 + EX28DRAFT_1475 0.85 -1.0 1,491,078 + EX28DRAFT_1475 0.85 -0.5 1,491,079 - EX28DRAFT_1475 0.86 -2.1 1,491,079 - EX28DRAFT_1475 0.86 +0.1 1,491,079 - EX28DRAFT_1475 0.86 -0.7 1,491,158 + +0.4 1,491,162 + +0.3 1,491,163 - -0.2 1,491,194 - +0.6 1,491,255 + +0.0 1,491,279 - +0.9 1,491,279 - -0.1 1,491,595 + EX28DRAFT_1476 0.29 +0.5 1,491,596 - EX28DRAFT_1476 0.29 -0.9 1,491,624 - EX28DRAFT_1476 0.32 -0.4 1,491,632 + EX28DRAFT_1476 0.33 -0.3 1,491,632 + EX28DRAFT_1476 0.33 -0.6 1,491,632 + EX28DRAFT_1476 0.33 +0.5 1,491,632 + EX28DRAFT_1476 0.33 +0.5 1,491,633 - EX28DRAFT_1476 0.33 -0.4 1,491,643 + EX28DRAFT_1476 0.34 -0.5 1,491,643 + EX28DRAFT_1476 0.34 -0.0 1,491,716 - EX28DRAFT_1476 0.41 -0.6 1,492,012 - EX28DRAFT_1476 0.71 -0.6 1,492,089 - EX28DRAFT_1476 0.79 -0.4 1,492,166 - EX28DRAFT_1476 0.87 -0.2 1,492,209 + +0.5 1,492,209 + +0.2 1,492,210 - +0.1 1,492,210 - +0.2 1,492,210 - +0.6 1,492,219 - +0.3 1,492,319 + -0.2 1,492,399 - -0.8 1,492,578 + EX28DRAFT_1477 0.66 -0.2 1,492,854 + +0.1 1,492,862 - -0.5 1,492,876 - +0.6 1,492,879 + +1.1 1,492,891 + +1.5 1,492,892 - -0.5 1,492,919 + -0.9 1,492,923 + +0.2 1,492,965 - +0.3 1,492,990 - -0.9 1,492,990 - -0.7 1,492,990 - +0.6 1,492,990 - -2.1 1,492,993 - -0.5 1,493,002 + +0.7 1,493,003 - +0.6 1,493,159 - -1.6
Or see this region's nucleotide sequence