Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1138 and EX28DRAFT_1139 are separated by 11 nucleotides EX28DRAFT_1139 and EX28DRAFT_1140 overlap by 4 nucleotides EX28DRAFT_1140 and EX28DRAFT_1141 overlap by 16 nucleotides
EX28DRAFT_1138: EX28DRAFT_1138 - Signal transduction histidine kinase, at 1,153,185 to 1,155,863
_1138
EX28DRAFT_1139: EX28DRAFT_1139 - hypothetical protein, at 1,155,875 to 1,156,300
_1139
EX28DRAFT_1140: EX28DRAFT_1140 - Protein of unknown function (DUF3131), at 1,156,297 to 1,157,691
_1140
EX28DRAFT_1141: EX28DRAFT_1141 - Protein of unknown function (DUF3131), at 1,157,676 to 1,159,223
_1141
Position (kb)
1156
1157
1158 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1155.449 kb on + strand, within EX28DRAFT_1138 at 1155.528 kb on - strand, within EX28DRAFT_1138 at 1155.528 kb on - strand, within EX28DRAFT_1138 at 1155.811 kb on + strand at 1155.812 kb on - strand at 1155.912 kb on + strand at 1155.912 kb on + strand at 1155.913 kb on - strand at 1156.089 kb on - strand, within EX28DRAFT_1139 at 1156.199 kb on - strand, within EX28DRAFT_1139 at 1156.215 kb on + strand, within EX28DRAFT_1139 at 1156.216 kb on - strand, within EX28DRAFT_1139 at 1156.216 kb on - strand, within EX28DRAFT_1139 at 1156.312 kb on + strand at 1156.352 kb on + strand at 1156.352 kb on + strand at 1156.353 kb on - strand at 1156.353 kb on - strand at 1156.364 kb on - strand at 1156.379 kb on + strand at 1156.379 kb on + strand at 1156.704 kb on + strand, within EX28DRAFT_1140 at 1156.705 kb on - strand, within EX28DRAFT_1140 at 1156.875 kb on + strand, within EX28DRAFT_1140 at 1156.875 kb on + strand, within EX28DRAFT_1140 at 1156.875 kb on + strand, within EX28DRAFT_1140 at 1156.876 kb on - strand, within EX28DRAFT_1140 at 1156.878 kb on - strand, within EX28DRAFT_1140 at 1156.878 kb on - strand, within EX28DRAFT_1140 at 1157.151 kb on + strand, within EX28DRAFT_1140 at 1157.168 kb on + strand, within EX28DRAFT_1140 at 1157.369 kb on + strand, within EX28DRAFT_1140 at 1157.714 kb on + strand at 1158.044 kb on - strand, within EX28DRAFT_1141 at 1158.047 kb on - strand, within EX28DRAFT_1141 at 1158.100 kb on + strand, within EX28DRAFT_1141 at 1158.203 kb on - strand, within EX28DRAFT_1141 at 1158.235 kb on + strand, within EX28DRAFT_1141 at 1158.235 kb on + strand, within EX28DRAFT_1141 at 1158.236 kb on - strand, within EX28DRAFT_1141 at 1158.290 kb on + strand, within EX28DRAFT_1141 at 1158.409 kb on + strand, within EX28DRAFT_1141 at 1158.418 kb on + strand, within EX28DRAFT_1141 at 1158.436 kb on + strand, within EX28DRAFT_1141 at 1158.436 kb on + strand, within EX28DRAFT_1141 at 1158.436 kb on + strand, within EX28DRAFT_1141 at 1158.437 kb on - strand, within EX28DRAFT_1141 at 1158.437 kb on - strand, within EX28DRAFT_1141 at 1158.437 kb on - strand, within EX28DRAFT_1141 at 1158.437 kb on - strand, within EX28DRAFT_1141 at 1158.441 kb on - strand, within EX28DRAFT_1141 at 1158.441 kb on - strand, within EX28DRAFT_1141 at 1158.452 kb on + strand, within EX28DRAFT_1141 at 1158.542 kb on + strand, within EX28DRAFT_1141 at 1158.543 kb on - strand, within EX28DRAFT_1141 at 1158.574 kb on + strand, within EX28DRAFT_1141 at 1158.607 kb on + strand, within EX28DRAFT_1141 at 1158.607 kb on + strand, within EX28DRAFT_1141 at 1158.607 kb on + strand, within EX28DRAFT_1141 at 1158.640 kb on + strand, within EX28DRAFT_1141
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,155,449 + EX28DRAFT_1138 0.85 -0.4 1,155,528 - EX28DRAFT_1138 0.87 -0.1 1,155,528 - EX28DRAFT_1138 0.87 +0.3 1,155,811 + +0.2 1,155,812 - +0.3 1,155,912 + -0.2 1,155,912 + -0.6 1,155,913 - -1.3 1,156,089 - EX28DRAFT_1139 0.50 +0.3 1,156,199 - EX28DRAFT_1139 0.76 +1.0 1,156,215 + EX28DRAFT_1139 0.80 -0.0 1,156,216 - EX28DRAFT_1139 0.80 -0.4 1,156,216 - EX28DRAFT_1139 0.80 +0.8 1,156,312 + +0.2 1,156,352 + +0.1 1,156,352 + -0.7 1,156,353 - -0.6 1,156,353 - -0.6 1,156,364 - +0.7 1,156,379 + +0.2 1,156,379 + -0.3 1,156,704 + EX28DRAFT_1140 0.29 -0.1 1,156,705 - EX28DRAFT_1140 0.29 -0.3 1,156,875 + EX28DRAFT_1140 0.41 -1.5 1,156,875 + EX28DRAFT_1140 0.41 -0.2 1,156,875 + EX28DRAFT_1140 0.41 +0.3 1,156,876 - EX28DRAFT_1140 0.42 -0.5 1,156,878 - EX28DRAFT_1140 0.42 -0.8 1,156,878 - EX28DRAFT_1140 0.42 -0.7 1,157,151 + EX28DRAFT_1140 0.61 -0.4 1,157,168 + EX28DRAFT_1140 0.62 -0.4 1,157,369 + EX28DRAFT_1140 0.77 +0.7 1,157,714 + +0.2 1,158,044 - EX28DRAFT_1141 0.24 -0.7 1,158,047 - EX28DRAFT_1141 0.24 -0.1 1,158,100 + EX28DRAFT_1141 0.27 +0.4 1,158,203 - EX28DRAFT_1141 0.34 +0.0 1,158,235 + EX28DRAFT_1141 0.36 -0.5 1,158,235 + EX28DRAFT_1141 0.36 -2.2 1,158,236 - EX28DRAFT_1141 0.36 -0.2 1,158,290 + EX28DRAFT_1141 0.40 -0.9 1,158,409 + EX28DRAFT_1141 0.47 +0.2 1,158,418 + EX28DRAFT_1141 0.48 +0.5 1,158,436 + EX28DRAFT_1141 0.49 -0.0 1,158,436 + EX28DRAFT_1141 0.49 +0.2 1,158,436 + EX28DRAFT_1141 0.49 -0.5 1,158,437 - EX28DRAFT_1141 0.49 +0.2 1,158,437 - EX28DRAFT_1141 0.49 +0.2 1,158,437 - EX28DRAFT_1141 0.49 -2.9 1,158,437 - EX28DRAFT_1141 0.49 -1.6 1,158,441 - EX28DRAFT_1141 0.49 -0.8 1,158,441 - EX28DRAFT_1141 0.49 -1.8 1,158,452 + EX28DRAFT_1141 0.50 +0.2 1,158,542 + EX28DRAFT_1141 0.56 +0.1 1,158,543 - EX28DRAFT_1141 0.56 +0.1 1,158,574 + EX28DRAFT_1141 0.58 -1.0 1,158,607 + EX28DRAFT_1141 0.60 +0.8 1,158,607 + EX28DRAFT_1141 0.60 +0.1 1,158,607 + EX28DRAFT_1141 0.60 -0.1 1,158,640 + EX28DRAFT_1141 0.62 +1.4
Or see this region's nucleotide sequence