Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1134

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1132 and EX28DRAFT_1133 are separated by 7 nucleotidesEX28DRAFT_1133 and EX28DRAFT_1134 are separated by 41 nucleotidesEX28DRAFT_1134 and EX28DRAFT_1135 are separated by 40 nucleotides EX28DRAFT_1132: EX28DRAFT_1132 - Thiol:disulfide interchange protein, at 1,145,859 to 1,147,883 _1132 EX28DRAFT_1133: EX28DRAFT_1133 - Protein-disulfide isomerase, at 1,147,891 to 1,148,502 _1133 EX28DRAFT_1134: EX28DRAFT_1134 - Protein-disulfide isomerase, at 1,148,544 to 1,149,302 _1134 EX28DRAFT_1135: EX28DRAFT_1135 - Uncharacterized protein conserved in bacteria, at 1,149,343 to 1,150,635 _1135 Position (kb) 1148 1149 1150Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1147.608 kb on - strand, within EX28DRAFT_1132at 1147.887 kb on + strandat 1147.887 kb on + strandat 1147.887 kb on + strandat 1147.888 kb on - strandat 1147.888 kb on - strandat 1147.909 kb on - strandat 1148.077 kb on + strand, within EX28DRAFT_1133at 1148.077 kb on + strand, within EX28DRAFT_1133at 1148.094 kb on + strand, within EX28DRAFT_1133at 1148.110 kb on + strand, within EX28DRAFT_1133at 1148.158 kb on - strand, within EX28DRAFT_1133at 1148.241 kb on + strand, within EX28DRAFT_1133at 1148.558 kb on - strandat 1148.560 kb on + strandat 1148.561 kb on - strandat 1148.649 kb on - strand, within EX28DRAFT_1134at 1148.649 kb on - strand, within EX28DRAFT_1134at 1148.820 kb on + strand, within EX28DRAFT_1134at 1149.213 kb on + strand, within EX28DRAFT_1134at 1149.216 kb on + strand, within EX28DRAFT_1134at 1149.217 kb on - strand, within EX28DRAFT_1134at 1149.536 kb on + strand, within EX28DRAFT_1135at 1149.536 kb on + strand, within EX28DRAFT_1135at 1149.554 kb on + strand, within EX28DRAFT_1135at 1149.554 kb on + strand, within EX28DRAFT_1135at 1149.555 kb on - strand, within EX28DRAFT_1135at 1149.642 kb on - strand, within EX28DRAFT_1135at 1149.816 kb on + strand, within EX28DRAFT_1135at 1149.947 kb on + strand, within EX28DRAFT_1135at 1149.947 kb on + strand, within EX28DRAFT_1135at 1149.948 kb on - strand, within EX28DRAFT_1135at 1149.983 kb on + strand, within EX28DRAFT_1135at 1150.097 kb on + strand, within EX28DRAFT_1135at 1150.097 kb on + strand, within EX28DRAFT_1135at 1150.098 kb on - strand, within EX28DRAFT_1135at 1150.230 kb on + strand, within EX28DRAFT_1135at 1150.231 kb on - strand, within EX28DRAFT_1135

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,147,608 - EX28DRAFT_1132 0.86 +0.1
1,147,887 + +0.3
1,147,887 + -0.1
1,147,887 + -0.0
1,147,888 - +0.7
1,147,888 - -0.2
1,147,909 - -1.0
1,148,077 + EX28DRAFT_1133 0.30 -0.5
1,148,077 + EX28DRAFT_1133 0.30 +3.7
1,148,094 + EX28DRAFT_1133 0.33 -0.7
1,148,110 + EX28DRAFT_1133 0.36 +1.9
1,148,158 - EX28DRAFT_1133 0.44 -0.3
1,148,241 + EX28DRAFT_1133 0.57 +0.5
1,148,558 - +2.2
1,148,560 + +0.1
1,148,561 - -0.5
1,148,649 - EX28DRAFT_1134 0.14 +0.3
1,148,649 - EX28DRAFT_1134 0.14 +0.4
1,148,820 + EX28DRAFT_1134 0.36 -1.5
1,149,213 + EX28DRAFT_1134 0.88 -0.9
1,149,216 + EX28DRAFT_1134 0.89 -3.5
1,149,217 - EX28DRAFT_1134 0.89 +0.3
1,149,536 + EX28DRAFT_1135 0.15 +0.1
1,149,536 + EX28DRAFT_1135 0.15 -0.5
1,149,554 + EX28DRAFT_1135 0.16 +0.2
1,149,554 + EX28DRAFT_1135 0.16 +0.5
1,149,555 - EX28DRAFT_1135 0.16 -0.8
1,149,642 - EX28DRAFT_1135 0.23 -0.1
1,149,816 + EX28DRAFT_1135 0.37 +0.7
1,149,947 + EX28DRAFT_1135 0.47 -0.6
1,149,947 + EX28DRAFT_1135 0.47 -0.2
1,149,948 - EX28DRAFT_1135 0.47 -0.2
1,149,983 + EX28DRAFT_1135 0.49 +0.4
1,150,097 + EX28DRAFT_1135 0.58 +0.1
1,150,097 + EX28DRAFT_1135 0.58 -0.0
1,150,098 - EX28DRAFT_1135 0.58 -0.2
1,150,230 + EX28DRAFT_1135 0.69 +0.9
1,150,231 - EX28DRAFT_1135 0.69 +0.2

Or see this region's nucleotide sequence