Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1013

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1011 and EX28DRAFT_1012 are separated by 496 nucleotidesEX28DRAFT_1012 and EX28DRAFT_1013 are separated by 143 nucleotidesEX28DRAFT_1013 and EX28DRAFT_1014 are separated by 262 nucleotides EX28DRAFT_1011: EX28DRAFT_1011 - FOG: EAL domain, at 1,016,745 to 1,018,268 _1011 EX28DRAFT_1012: EX28DRAFT_1012 - Predicted membrane protein, at 1,018,765 to 1,019,109 _1012 EX28DRAFT_1013: EX28DRAFT_1013 - hypothetical protein, at 1,019,253 to 1,019,702 _1013 EX28DRAFT_1014: EX28DRAFT_1014 - O-methyltransferase, at 1,019,965 to 1,020,996 _1014 Position (kb) 1019 1020Strain fitness (log2 ratio) -2 -1 0 1at 1018.512 kb on - strandat 1018.628 kb on + strandat 1018.628 kb on + strandat 1018.629 kb on - strandat 1018.680 kb on + strandat 1018.721 kb on - strandat 1018.721 kb on - strandat 1018.764 kb on + strandat 1018.882 kb on + strand, within EX28DRAFT_1012at 1018.882 kb on + strand, within EX28DRAFT_1012at 1018.882 kb on + strand, within EX28DRAFT_1012at 1018.882 kb on + strand, within EX28DRAFT_1012at 1018.883 kb on - strand, within EX28DRAFT_1012at 1018.893 kb on + strand, within EX28DRAFT_1012at 1019.005 kb on - strand, within EX28DRAFT_1012at 1019.033 kb on - strand, within EX28DRAFT_1012at 1019.080 kb on + strandat 1019.140 kb on + strandat 1019.140 kb on + strandat 1019.183 kb on + strandat 1019.224 kb on - strandat 1019.334 kb on - strand, within EX28DRAFT_1013at 1019.343 kb on + strand, within EX28DRAFT_1013at 1019.364 kb on + strand, within EX28DRAFT_1013at 1019.451 kb on + strand, within EX28DRAFT_1013at 1019.453 kb on + strand, within EX28DRAFT_1013at 1019.453 kb on + strand, within EX28DRAFT_1013at 1019.523 kb on + strand, within EX28DRAFT_1013at 1019.680 kb on - strandat 1019.700 kb on + strandat 1019.720 kb on + strandat 1019.827 kb on + strandat 1019.827 kb on + strandat 1019.827 kb on + strandat 1019.838 kb on + strandat 1019.866 kb on + strandat 1019.866 kb on + strandat 1019.908 kb on - strandat 1019.908 kb on - strandat 1019.946 kb on + strandat 1019.976 kb on + strandat 1019.976 kb on + strandat 1019.979 kb on + strandat 1019.980 kb on - strandat 1019.991 kb on - strandat 1020.075 kb on - strand, within EX28DRAFT_1014at 1020.174 kb on - strand, within EX28DRAFT_1014at 1020.336 kb on - strand, within EX28DRAFT_1014at 1020.336 kb on - strand, within EX28DRAFT_1014at 1020.447 kb on + strand, within EX28DRAFT_1014at 1020.447 kb on + strand, within EX28DRAFT_1014at 1020.481 kb on - strand, within EX28DRAFT_1014

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,018,512 - +0.3
1,018,628 + -0.2
1,018,628 + +0.3
1,018,629 - -0.5
1,018,680 + -0.0
1,018,721 - -0.3
1,018,721 - -0.0
1,018,764 + +1.6
1,018,882 + EX28DRAFT_1012 0.34 +0.1
1,018,882 + EX28DRAFT_1012 0.34 -1.0
1,018,882 + EX28DRAFT_1012 0.34 +0.4
1,018,882 + EX28DRAFT_1012 0.34 -0.7
1,018,883 - EX28DRAFT_1012 0.34 -1.0
1,018,893 + EX28DRAFT_1012 0.37 -0.0
1,019,005 - EX28DRAFT_1012 0.70 -0.4
1,019,033 - EX28DRAFT_1012 0.78 -0.1
1,019,080 + -0.1
1,019,140 + +0.5
1,019,140 + -1.4
1,019,183 + +1.4
1,019,224 - +0.3
1,019,334 - EX28DRAFT_1013 0.18 +0.5
1,019,343 + EX28DRAFT_1013 0.20 +0.2
1,019,364 + EX28DRAFT_1013 0.25 +0.4
1,019,451 + EX28DRAFT_1013 0.44 -0.0
1,019,453 + EX28DRAFT_1013 0.44 +0.5
1,019,453 + EX28DRAFT_1013 0.44 +0.9
1,019,523 + EX28DRAFT_1013 0.60 +0.2
1,019,680 - +0.9
1,019,700 + -0.5
1,019,720 + -0.4
1,019,827 + -0.1
1,019,827 + -0.4
1,019,827 + -0.4
1,019,838 + +0.9
1,019,866 + +0.3
1,019,866 + -2.0
1,019,908 - +0.3
1,019,908 - -0.3
1,019,946 + +0.8
1,019,976 + +0.4
1,019,976 + +0.8
1,019,979 + +0.3
1,019,980 - -0.2
1,019,991 - +0.1
1,020,075 - EX28DRAFT_1014 0.11 -0.3
1,020,174 - EX28DRAFT_1014 0.20 +0.7
1,020,336 - EX28DRAFT_1014 0.36 -0.3
1,020,336 - EX28DRAFT_1014 0.36 +0.2
1,020,447 + EX28DRAFT_1014 0.47 -0.3
1,020,447 + EX28DRAFT_1014 0.47 +1.2
1,020,481 - EX28DRAFT_1014 0.50 -0.4

Or see this region's nucleotide sequence