Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0879 and EX28DRAFT_0880 are separated by 120 nucleotides EX28DRAFT_0880 and EX28DRAFT_0881 are separated by 41 nucleotides EX28DRAFT_0881 and EX28DRAFT_0882 are separated by 2 nucleotides EX28DRAFT_0882 and EX28DRAFT_0883 are separated by 97 nucleotides EX28DRAFT_0883 and EX28DRAFT_0884 overlap by 4 nucleotides EX28DRAFT_0884 and EX28DRAFT_0885 are separated by 66 nucleotides EX28DRAFT_0885 and EX28DRAFT_0886 are separated by 31 nucleotides
EX28DRAFT_0879: EX28DRAFT_0879 - Helix-turn-helix, at 891,403 to 891,702
_0879
EX28DRAFT_0880: EX28DRAFT_0880 - Regulatory phage protein cox, at 891,823 to 892,101
_0880
EX28DRAFT_0881: EX28DRAFT_0881 - hypothetical protein, at 892,143 to 892,382
_0881
EX28DRAFT_0882: EX28DRAFT_0882 - hypothetical protein, at 892,385 to 892,573
_0882
EX28DRAFT_0883: EX28DRAFT_0883 - hypothetical protein, at 892,671 to 892,841
_0883
EX28DRAFT_0884: EX28DRAFT_0884 - hypothetical protein, at 892,838 to 893,338
_0884
EX28DRAFT_0885: EX28DRAFT_0885 - Protein of unknown function (DUF2732), at 893,405 to 893,614
_0885
EX28DRAFT_0886: EX28DRAFT_0886 - hypothetical protein, at 893,646 to 893,909
_0886
Position (kb) 892
893 Strain fitness (log2 ratio) -2
-1
0
1
2 at 891.786 kb on - strand at 891.796 kb on - strand at 891.817 kb on + strand at 891.839 kb on + strand at 891.840 kb on - strand at 891.840 kb on - strand at 891.840 kb on - strand at 891.840 kb on - strand at 891.840 kb on - strand at 891.840 kb on - strand at 891.843 kb on + strand at 891.843 kb on + strand at 891.882 kb on + strand, within EX28DRAFT_0880 at 891.888 kb on + strand, within EX28DRAFT_0880 at 891.889 kb on - strand, within EX28DRAFT_0880 at 891.889 kb on - strand, within EX28DRAFT_0880 at 891.985 kb on + strand, within EX28DRAFT_0880 at 891.994 kb on + strand, within EX28DRAFT_0880 at 891.994 kb on + strand, within EX28DRAFT_0880 at 892.030 kb on + strand, within EX28DRAFT_0880 at 892.178 kb on + strand, within EX28DRAFT_0881 at 892.179 kb on - strand, within EX28DRAFT_0881 at 892.190 kb on + strand, within EX28DRAFT_0881 at 892.326 kb on + strand, within EX28DRAFT_0881 at 892.327 kb on - strand, within EX28DRAFT_0881 at 892.376 kb on + strand at 892.377 kb on - strand at 892.377 kb on - strand at 892.386 kb on + strand at 892.386 kb on + strand at 892.387 kb on - strand at 892.387 kb on - strand at 892.387 kb on - strand at 892.394 kb on - strand at 892.408 kb on + strand, within EX28DRAFT_0882 at 892.426 kb on + strand, within EX28DRAFT_0882 at 892.426 kb on + strand, within EX28DRAFT_0882 at 892.513 kb on + strand, within EX28DRAFT_0882 at 892.547 kb on + strand, within EX28DRAFT_0882 at 892.568 kb on - strand at 892.568 kb on - strand at 892.578 kb on + strand at 892.578 kb on + strand at 892.644 kb on + strand at 892.671 kb on - strand at 892.766 kb on - strand, within EX28DRAFT_0883 at 892.766 kb on - strand, within EX28DRAFT_0883 at 892.904 kb on + strand, within EX28DRAFT_0884 at 892.905 kb on - strand, within EX28DRAFT_0884 at 892.996 kb on - strand, within EX28DRAFT_0884 at 893.197 kb on + strand, within EX28DRAFT_0884 at 893.198 kb on - strand, within EX28DRAFT_0884 at 893.296 kb on + strand at 893.297 kb on - strand at 893.305 kb on - strand at 893.327 kb on + strand at 893.332 kb on - strand at 893.336 kb on + strand at 893.399 kb on - strand at 893.527 kb on + strand, within EX28DRAFT_0885 at 893.569 kb on - strand, within EX28DRAFT_0885 at 893.569 kb on - strand, within EX28DRAFT_0885 at 893.572 kb on - strand, within EX28DRAFT_0885 at 893.572 kb on - strand, within EX28DRAFT_0885 at 893.572 kb on - strand, within EX28DRAFT_0885 at 893.653 kb on + strand at 893.666 kb on + strand at 893.676 kb on + strand, within EX28DRAFT_0886 at 893.677 kb on - strand, within EX28DRAFT_0886 at 893.798 kb on + strand, within EX28DRAFT_0886 at 893.798 kb on + strand, within EX28DRAFT_0886 at 893.798 kb on + strand, within EX28DRAFT_0886 at 893.798 kb on + strand, within EX28DRAFT_0886 at 893.798 kb on + strand, within EX28DRAFT_0886 at 893.799 kb on - strand, within EX28DRAFT_0886
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 891,786 - -1.1 891,796 - +0.9 891,817 + +0.1 891,839 + +0.2 891,840 - +0.0 891,840 - +0.1 891,840 - +1.2 891,840 - +0.4 891,840 - -0.0 891,840 - -0.2 891,843 + -0.4 891,843 + +0.2 891,882 + EX28DRAFT_0880 0.21 +0.2 891,888 + EX28DRAFT_0880 0.23 +1.7 891,889 - EX28DRAFT_0880 0.24 +0.4 891,889 - EX28DRAFT_0880 0.24 +0.1 891,985 + EX28DRAFT_0880 0.58 -0.2 891,994 + EX28DRAFT_0880 0.61 -0.3 891,994 + EX28DRAFT_0880 0.61 +0.4 892,030 + EX28DRAFT_0880 0.74 +1.9 892,178 + EX28DRAFT_0881 0.15 +0.0 892,179 - EX28DRAFT_0881 0.15 -0.2 892,190 + EX28DRAFT_0881 0.20 +0.9 892,326 + EX28DRAFT_0881 0.76 -0.9 892,327 - EX28DRAFT_0881 0.77 +0.2 892,376 + -2.2 892,377 - -0.1 892,377 - -1.4 892,386 + +1.3 892,386 + -0.2 892,387 - -1.3 892,387 - +0.0 892,387 - +0.2 892,394 - +0.1 892,408 + EX28DRAFT_0882 0.12 +0.5 892,426 + EX28DRAFT_0882 0.22 +0.9 892,426 + EX28DRAFT_0882 0.22 -0.3 892,513 + EX28DRAFT_0882 0.68 +0.7 892,547 + EX28DRAFT_0882 0.86 +1.2 892,568 - -0.5 892,568 - +0.1 892,578 + +0.2 892,578 + +1.0 892,644 + +0.1 892,671 - +0.2 892,766 - EX28DRAFT_0883 0.56 +0.2 892,766 - EX28DRAFT_0883 0.56 +0.3 892,904 + EX28DRAFT_0884 0.13 -1.5 892,905 - EX28DRAFT_0884 0.13 -0.3 892,996 - EX28DRAFT_0884 0.32 +0.1 893,197 + EX28DRAFT_0884 0.72 -2.2 893,198 - EX28DRAFT_0884 0.72 +0.1 893,296 + +1.1 893,297 - -0.0 893,305 - +0.6 893,327 + +0.4 893,332 - -0.3 893,336 + +0.4 893,399 - -0.2 893,527 + EX28DRAFT_0885 0.58 -0.2 893,569 - EX28DRAFT_0885 0.78 -0.4 893,569 - EX28DRAFT_0885 0.78 -1.1 893,572 - EX28DRAFT_0885 0.80 -0.3 893,572 - EX28DRAFT_0885 0.80 +2.4 893,572 - EX28DRAFT_0885 0.80 +0.3 893,653 + +0.2 893,666 + +0.3 893,676 + EX28DRAFT_0886 0.11 -0.2 893,677 - EX28DRAFT_0886 0.12 -0.6 893,798 + EX28DRAFT_0886 0.58 -1.6 893,798 + EX28DRAFT_0886 0.58 -0.6 893,798 + EX28DRAFT_0886 0.58 +0.6 893,798 + EX28DRAFT_0886 0.58 +0.2 893,798 + EX28DRAFT_0886 0.58 -0.2 893,799 - EX28DRAFT_0886 0.58 -1.0
Or see this region's nucleotide sequence