Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0865

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0864 and EX28DRAFT_0865 are separated by 65 nucleotidesEX28DRAFT_0865 and EX28DRAFT_0866 are separated by 478 nucleotides EX28DRAFT_0864: EX28DRAFT_0864 - thymidine kinase (EC 2.7.1.21), at 875,542 to 876,156 _0864 EX28DRAFT_0865: EX28DRAFT_0865 - Alcohol dehydrogenase, class IV, at 876,222 to 878,900 _0865 EX28DRAFT_0866: EX28DRAFT_0866 - membrane protein, MarC family, at 879,379 to 880,026 _0866 Position (kb) 876 877 878 879Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 875.257 kb on - strandat 875.279 kb on - strandat 875.279 kb on - strandat 875.289 kb on + strandat 875.296 kb on + strandat 875.297 kb on - strandat 875.361 kb on - strandat 875.363 kb on - strandat 875.390 kb on - strandat 875.464 kb on + strandat 875.554 kb on + strandat 875.554 kb on + strandat 875.555 kb on - strandat 875.618 kb on - strand, within EX28DRAFT_0864at 875.647 kb on + strand, within EX28DRAFT_0864at 875.648 kb on - strand, within EX28DRAFT_0864at 875.650 kb on - strand, within EX28DRAFT_0864at 875.761 kb on - strand, within EX28DRAFT_0864at 876.056 kb on + strand, within EX28DRAFT_0864at 876.057 kb on - strand, within EX28DRAFT_0864at 876.057 kb on - strand, within EX28DRAFT_0864at 876.073 kb on + strand, within EX28DRAFT_0864at 876.097 kb on + strandat 876.098 kb on - strandat 876.100 kb on - strandat 876.171 kb on + strandat 876.171 kb on + strandat 876.220 kb on - strandat 876.220 kb on - strandat 876.314 kb on - strandat 876.377 kb on + strandat 876.378 kb on - strandat 876.410 kb on + strandat 876.410 kb on + strandat 876.410 kb on + strandat 876.411 kb on - strandat 876.411 kb on - strandat 876.411 kb on - strandat 876.414 kb on + strandat 876.415 kb on - strandat 876.415 kb on - strandat 876.604 kb on + strand, within EX28DRAFT_0865at 876.605 kb on - strand, within EX28DRAFT_0865at 876.648 kb on - strand, within EX28DRAFT_0865at 876.728 kb on + strand, within EX28DRAFT_0865at 876.779 kb on + strand, within EX28DRAFT_0865at 876.779 kb on + strand, within EX28DRAFT_0865at 876.916 kb on + strand, within EX28DRAFT_0865at 876.916 kb on + strand, within EX28DRAFT_0865at 876.917 kb on - strand, within EX28DRAFT_0865at 876.917 kb on - strand, within EX28DRAFT_0865at 877.071 kb on + strand, within EX28DRAFT_0865at 877.159 kb on + strand, within EX28DRAFT_0865at 877.160 kb on - strand, within EX28DRAFT_0865at 877.160 kb on - strand, within EX28DRAFT_0865at 877.163 kb on + strand, within EX28DRAFT_0865at 877.182 kb on - strand, within EX28DRAFT_0865at 877.225 kb on + strand, within EX28DRAFT_0865at 877.225 kb on + strand, within EX28DRAFT_0865at 877.226 kb on - strand, within EX28DRAFT_0865at 877.226 kb on - strand, within EX28DRAFT_0865at 877.226 kb on - strand, within EX28DRAFT_0865at 877.305 kb on - strand, within EX28DRAFT_0865at 877.523 kb on + strand, within EX28DRAFT_0865at 877.524 kb on - strand, within EX28DRAFT_0865at 877.675 kb on + strand, within EX28DRAFT_0865at 877.722 kb on - strand, within EX28DRAFT_0865at 877.722 kb on - strand, within EX28DRAFT_0865at 877.871 kb on - strand, within EX28DRAFT_0865at 877.874 kb on + strand, within EX28DRAFT_0865at 877.875 kb on - strand, within EX28DRAFT_0865at 877.875 kb on - strand, within EX28DRAFT_0865at 878.126 kb on - strand, within EX28DRAFT_0865at 878.293 kb on + strand, within EX28DRAFT_0865at 878.293 kb on + strand, within EX28DRAFT_0865at 878.294 kb on - strand, within EX28DRAFT_0865at 878.447 kb on + strand, within EX28DRAFT_0865at 878.448 kb on - strand, within EX28DRAFT_0865at 878.448 kb on - strand, within EX28DRAFT_0865at 878.540 kb on + strand, within EX28DRAFT_0865at 878.540 kb on + strand, within EX28DRAFT_0865at 878.559 kb on - strand, within EX28DRAFT_0865at 878.662 kb on + strandat 878.663 kb on - strandat 878.672 kb on - strandat 878.675 kb on + strandat 878.676 kb on - strandat 878.708 kb on + strandat 878.708 kb on + strandat 878.804 kb on + strandat 878.804 kb on + strandat 878.834 kb on - strandat 878.888 kb on + strandat 878.888 kb on + strandat 878.889 kb on - strandat 878.901 kb on - strandat 878.915 kb on - strandat 878.921 kb on + strandat 878.950 kb on - strandat 878.962 kb on - strandat 879.030 kb on + strandat 879.039 kb on - strandat 879.118 kb on + strandat 879.204 kb on - strandat 879.241 kb on - strandat 879.242 kb on + strandat 879.242 kb on + strandat 879.242 kb on + strandat 879.242 kb on + strandat 879.242 kb on + strandat 879.243 kb on - strandat 879.246 kb on + strandat 879.247 kb on - strandat 879.248 kb on + strandat 879.249 kb on - strandat 879.252 kb on + strandat 879.297 kb on + strandat 879.298 kb on - strandat 879.298 kb on - strandat 879.306 kb on - strandat 879.306 kb on - strandat 879.409 kb on + strandat 879.410 kb on - strandat 879.475 kb on - strand, within EX28DRAFT_0866at 879.477 kb on + strand, within EX28DRAFT_0866at 879.487 kb on + strand, within EX28DRAFT_0866at 879.487 kb on + strand, within EX28DRAFT_0866at 879.511 kb on - strand, within EX28DRAFT_0866at 879.511 kb on - strand, within EX28DRAFT_0866at 879.539 kb on + strand, within EX28DRAFT_0866at 879.539 kb on + strand, within EX28DRAFT_0866at 879.540 kb on - strand, within EX28DRAFT_0866at 879.540 kb on - strand, within EX28DRAFT_0866at 879.543 kb on + strand, within EX28DRAFT_0866at 879.543 kb on + strand, within EX28DRAFT_0866at 879.544 kb on - strand, within EX28DRAFT_0866at 879.548 kb on + strand, within EX28DRAFT_0866at 879.549 kb on - strand, within EX28DRAFT_0866at 879.549 kb on - strand, within EX28DRAFT_0866at 879.549 kb on - strand, within EX28DRAFT_0866at 879.730 kb on - strand, within EX28DRAFT_0866

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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875,257 - +0.7
875,279 - +0.7
875,279 - +0.8
875,289 + +0.1
875,296 + +0.5
875,297 - +0.9
875,361 - +0.4
875,363 - +0.1
875,390 - +0.2
875,464 + -3.1
875,554 + -0.4
875,554 + +0.2
875,555 - +0.9
875,618 - EX28DRAFT_0864 0.12 +0.3
875,647 + EX28DRAFT_0864 0.17 +0.3
875,648 - EX28DRAFT_0864 0.17 +0.5
875,650 - EX28DRAFT_0864 0.18 +1.7
875,761 - EX28DRAFT_0864 0.36 +0.1
876,056 + EX28DRAFT_0864 0.84 +0.1
876,057 - EX28DRAFT_0864 0.84 +0.4
876,057 - EX28DRAFT_0864 0.84 +0.9
876,073 + EX28DRAFT_0864 0.86 +0.0
876,097 + -0.5
876,098 - -0.3
876,100 - +1.0
876,171 + +0.5
876,171 + -0.0
876,220 - +0.5
876,220 - +0.3
876,314 - +0.4
876,377 + -1.3
876,378 - +0.4
876,410 + +1.2
876,410 + -0.6
876,410 + +0.1
876,411 - +0.6
876,411 - +0.5
876,411 - -0.2
876,414 + -0.3
876,415 - +1.0
876,415 - -0.1
876,604 + EX28DRAFT_0865 0.14 -0.7
876,605 - EX28DRAFT_0865 0.14 -0.5
876,648 - EX28DRAFT_0865 0.16 -0.3
876,728 + EX28DRAFT_0865 0.19 +0.2
876,779 + EX28DRAFT_0865 0.21 +1.2
876,779 + EX28DRAFT_0865 0.21 +0.4
876,916 + EX28DRAFT_0865 0.26 +0.2
876,916 + EX28DRAFT_0865 0.26 +0.4
876,917 - EX28DRAFT_0865 0.26 +0.4
876,917 - EX28DRAFT_0865 0.26 -0.0
877,071 + EX28DRAFT_0865 0.32 +0.2
877,159 + EX28DRAFT_0865 0.35 -1.0
877,160 - EX28DRAFT_0865 0.35 +0.7
877,160 - EX28DRAFT_0865 0.35 +0.5
877,163 + EX28DRAFT_0865 0.35 +0.6
877,182 - EX28DRAFT_0865 0.36 -0.2
877,225 + EX28DRAFT_0865 0.37 +0.0
877,225 + EX28DRAFT_0865 0.37 +0.4
877,226 - EX28DRAFT_0865 0.37 +0.4
877,226 - EX28DRAFT_0865 0.37 +0.4
877,226 - EX28DRAFT_0865 0.37 -0.8
877,305 - EX28DRAFT_0865 0.40 +0.4
877,523 + EX28DRAFT_0865 0.49 +0.3
877,524 - EX28DRAFT_0865 0.49 +0.3
877,675 + EX28DRAFT_0865 0.54 -0.4
877,722 - EX28DRAFT_0865 0.56 +0.2
877,722 - EX28DRAFT_0865 0.56 -1.1
877,871 - EX28DRAFT_0865 0.62 +0.7
877,874 + EX28DRAFT_0865 0.62 +0.7
877,875 - EX28DRAFT_0865 0.62 +0.6
877,875 - EX28DRAFT_0865 0.62 +0.9
878,126 - EX28DRAFT_0865 0.71 +1.3
878,293 + EX28DRAFT_0865 0.77 -0.0
878,293 + EX28DRAFT_0865 0.77 +0.2
878,294 - EX28DRAFT_0865 0.77 +0.4
878,447 + EX28DRAFT_0865 0.83 +0.1
878,448 - EX28DRAFT_0865 0.83 +0.8
878,448 - EX28DRAFT_0865 0.83 +0.6
878,540 + EX28DRAFT_0865 0.87 +0.5
878,540 + EX28DRAFT_0865 0.87 +0.4
878,559 - EX28DRAFT_0865 0.87 +1.1
878,662 + -1.0
878,663 - -0.7
878,672 - +0.4
878,675 + +0.8
878,676 - -1.4
878,708 + -0.9
878,708 + +0.9
878,804 + +0.4
878,804 + -0.4
878,834 - -0.0
878,888 + -0.4
878,888 + +0.3
878,889 - -0.9
878,901 - +1.2
878,915 - +0.4
878,921 + +0.1
878,950 - -0.1
878,962 - +0.1
879,030 + -0.4
879,039 - +0.4
879,118 + +0.4
879,204 - -0.0
879,241 - -0.3
879,242 + -0.2
879,242 + +0.0
879,242 + -0.1
879,242 + +2.4
879,242 + -0.5
879,243 - +0.6
879,246 + -0.7
879,247 - +0.6
879,248 + +0.4
879,249 - -0.3
879,252 + +0.1
879,297 + -0.5
879,298 - -1.4
879,298 - -3.7
879,306 - +0.9
879,306 - +1.0
879,409 + -0.9
879,410 - +0.0
879,475 - EX28DRAFT_0866 0.15 +0.5
879,477 + EX28DRAFT_0866 0.15 +0.4
879,487 + EX28DRAFT_0866 0.17 -0.1
879,487 + EX28DRAFT_0866 0.17 -0.3
879,511 - EX28DRAFT_0866 0.20 -0.1
879,511 - EX28DRAFT_0866 0.20 -0.7
879,539 + EX28DRAFT_0866 0.25 -0.3
879,539 + EX28DRAFT_0866 0.25 +0.6
879,540 - EX28DRAFT_0866 0.25 +0.2
879,540 - EX28DRAFT_0866 0.25 -0.0
879,543 + EX28DRAFT_0866 0.25 -0.1
879,543 + EX28DRAFT_0866 0.25 -0.2
879,544 - EX28DRAFT_0866 0.25 -0.3
879,548 + EX28DRAFT_0866 0.26 -0.3
879,549 - EX28DRAFT_0866 0.26 +0.2
879,549 - EX28DRAFT_0866 0.26 +0.0
879,549 - EX28DRAFT_0866 0.26 -0.3
879,730 - EX28DRAFT_0866 0.54 +0.1

Or see this region's nucleotide sequence