Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0843 and EX28DRAFT_0844 are separated by 9 nucleotides EX28DRAFT_0844 and EX28DRAFT_0845 are separated by 13 nucleotides EX28DRAFT_0845 and EX28DRAFT_0846 overlap by 4 nucleotides
EX28DRAFT_0843: EX28DRAFT_0843 - nitrate ABC transporter, permease protein, at 846,619 to 847,497
_0843
EX28DRAFT_0844: EX28DRAFT_0844 - nitrate transport ATP-binding subunits C and D, at 847,507 to 848,295
_0844
EX28DRAFT_0845: EX28DRAFT_0845 - nitrite reductase [NAD(P)H], large subunit/nitrite reductase [NAD(P)H], small subunit, at 848,309 to 852,295
_0845
EX28DRAFT_0846: EX28DRAFT_0846 - Anaerobic dehydrogenases, typically selenocysteine-containing, at 852,292 to 854,817
_0846
Position (kb) 848
849
850
851
852
853 Strain fitness (log2 ratio) -1
0
1 at 847.479 kb on + strand at 848.234 kb on - strand at 848.426 kb on + strand at 849.329 kb on + strand, within EX28DRAFT_0845 at 849.330 kb on - strand, within EX28DRAFT_0845 at 849.617 kb on + strand, within EX28DRAFT_0845 at 849.945 kb on + strand, within EX28DRAFT_0845 at 850.453 kb on + strand, within EX28DRAFT_0845 at 850.454 kb on - strand, within EX28DRAFT_0845 at 850.454 kb on - strand, within EX28DRAFT_0845 at 850.527 kb on - strand, within EX28DRAFT_0845 at 850.783 kb on + strand, within EX28DRAFT_0845 at 850.784 kb on - strand, within EX28DRAFT_0845 at 850.877 kb on - strand, within EX28DRAFT_0845 at 850.979 kb on + strand, within EX28DRAFT_0845 at 850.980 kb on - strand, within EX28DRAFT_0845 at 850.980 kb on - strand, within EX28DRAFT_0845 at 851.023 kb on + strand, within EX28DRAFT_0845 at 851.026 kb on + strand, within EX28DRAFT_0845 at 851.184 kb on - strand, within EX28DRAFT_0845 at 851.184 kb on - strand, within EX28DRAFT_0845 at 851.603 kb on + strand, within EX28DRAFT_0845 at 851.603 kb on + strand, within EX28DRAFT_0845 at 851.603 kb on + strand, within EX28DRAFT_0845 at 851.709 kb on - strand, within EX28DRAFT_0845 at 851.709 kb on - strand, within EX28DRAFT_0845 at 852.155 kb on + strand at 852.607 kb on + strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.608 kb on - strand, within EX28DRAFT_0846 at 852.611 kb on - strand, within EX28DRAFT_0846 at 852.701 kb on - strand, within EX28DRAFT_0846 at 852.958 kb on - strand, within EX28DRAFT_0846 at 853.029 kb on + strand, within EX28DRAFT_0846 at 853.031 kb on + strand, within EX28DRAFT_0846 at 853.032 kb on - strand, within EX28DRAFT_0846 at 853.032 kb on - strand, within EX28DRAFT_0846 at 853.032 kb on - strand, within EX28DRAFT_0846 at 853.043 kb on - strand, within EX28DRAFT_0846 at 853.054 kb on - strand, within EX28DRAFT_0846 at 853.081 kb on + strand, within EX28DRAFT_0846 at 853.081 kb on + strand, within EX28DRAFT_0846
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 847,479 + -0.4 848,234 - +0.8 848,426 + -0.7 849,329 + EX28DRAFT_0845 0.26 +1.0 849,330 - EX28DRAFT_0845 0.26 -0.1 849,617 + EX28DRAFT_0845 0.33 +1.0 849,945 + EX28DRAFT_0845 0.41 -0.6 850,453 + EX28DRAFT_0845 0.54 +0.4 850,454 - EX28DRAFT_0845 0.54 -0.4 850,454 - EX28DRAFT_0845 0.54 +0.1 850,527 - EX28DRAFT_0845 0.56 +0.0 850,783 + EX28DRAFT_0845 0.62 -1.1 850,784 - EX28DRAFT_0845 0.62 +0.1 850,877 - EX28DRAFT_0845 0.64 -0.2 850,979 + EX28DRAFT_0845 0.67 -0.2 850,980 - EX28DRAFT_0845 0.67 -1.3 850,980 - EX28DRAFT_0845 0.67 -0.8 851,023 + EX28DRAFT_0845 0.68 -0.2 851,026 + EX28DRAFT_0845 0.68 -0.2 851,184 - EX28DRAFT_0845 0.72 +1.1 851,184 - EX28DRAFT_0845 0.72 +0.3 851,603 + EX28DRAFT_0845 0.83 -0.0 851,603 + EX28DRAFT_0845 0.83 -0.3 851,603 + EX28DRAFT_0845 0.83 -0.2 851,709 - EX28DRAFT_0845 0.85 -0.2 851,709 - EX28DRAFT_0845 0.85 +0.2 852,155 + -0.6 852,607 + EX28DRAFT_0846 0.12 -0.3 852,608 - EX28DRAFT_0846 0.13 -1.0 852,608 - EX28DRAFT_0846 0.13 -0.3 852,608 - EX28DRAFT_0846 0.13 -0.1 852,608 - EX28DRAFT_0846 0.13 -0.2 852,608 - EX28DRAFT_0846 0.13 -0.1 852,611 - EX28DRAFT_0846 0.13 +0.4 852,701 - EX28DRAFT_0846 0.16 -0.2 852,958 - EX28DRAFT_0846 0.26 -0.5 853,029 + EX28DRAFT_0846 0.29 -1.7 853,031 + EX28DRAFT_0846 0.29 +0.2 853,032 - EX28DRAFT_0846 0.29 -0.6 853,032 - EX28DRAFT_0846 0.29 -0.0 853,032 - EX28DRAFT_0846 0.29 -0.8 853,043 - EX28DRAFT_0846 0.30 -0.5 853,054 - EX28DRAFT_0846 0.30 -0.8 853,081 + EX28DRAFT_0846 0.31 +0.2 853,081 + EX28DRAFT_0846 0.31 +1.0
Or see this region's nucleotide sequence