Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0810 and EX28DRAFT_0811 are separated by 115 nucleotides EX28DRAFT_0811 and EX28DRAFT_0812 are separated by 3 nucleotides EX28DRAFT_0812 and EX28DRAFT_0813 are separated by 75 nucleotides EX28DRAFT_0813 and EX28DRAFT_0814 are separated by 3 nucleotides
EX28DRAFT_0810: EX28DRAFT_0810 - hypothetical protein, at 814,209 to 814,643
_0810
EX28DRAFT_0811: EX28DRAFT_0811 - hypothetical protein, at 814,759 to 815,274
_0811
EX28DRAFT_0812: EX28DRAFT_0812 - hypothetical protein, at 815,278 to 816,354
_0812
EX28DRAFT_0813: EX28DRAFT_0813 - Uncharacterized conserved protein, at 816,430 to 816,870
_0813
EX28DRAFT_0814: EX28DRAFT_0814 - RHS repeat-associated core domain, at 816,874 to 821,232
_0814
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1 at 814.641 kb on + strand at 814.694 kb on + strand at 814.716 kb on + strand at 814.716 kb on + strand at 814.716 kb on + strand at 814.716 kb on + strand at 814.800 kb on + strand at 814.955 kb on - strand, within EX28DRAFT_0811 at 814.991 kb on + strand, within EX28DRAFT_0811 at 814.991 kb on + strand, within EX28DRAFT_0811 at 814.991 kb on + strand, within EX28DRAFT_0811 at 815.042 kb on - strand, within EX28DRAFT_0811 at 815.043 kb on + strand, within EX28DRAFT_0811 at 815.043 kb on + strand, within EX28DRAFT_0811 at 815.043 kb on + strand, within EX28DRAFT_0811 at 815.044 kb on - strand, within EX28DRAFT_0811 at 815.182 kb on + strand, within EX28DRAFT_0811 at 815.303 kb on + strand at 815.366 kb on - strand at 815.366 kb on - strand at 815.447 kb on - strand, within EX28DRAFT_0812 at 815.620 kb on - strand, within EX28DRAFT_0812 at 815.641 kb on - strand, within EX28DRAFT_0812 at 815.644 kb on - strand, within EX28DRAFT_0812 at 815.644 kb on - strand, within EX28DRAFT_0812 at 815.655 kb on + strand, within EX28DRAFT_0812 at 815.656 kb on - strand, within EX28DRAFT_0812 at 815.818 kb on + strand, within EX28DRAFT_0812 at 815.818 kb on + strand, within EX28DRAFT_0812 at 815.819 kb on - strand, within EX28DRAFT_0812 at 815.819 kb on - strand, within EX28DRAFT_0812 at 815.819 kb on - strand, within EX28DRAFT_0812 at 815.824 kb on + strand, within EX28DRAFT_0812 at 815.824 kb on + strand, within EX28DRAFT_0812 at 815.824 kb on + strand, within EX28DRAFT_0812 at 815.824 kb on + strand, within EX28DRAFT_0812 at 815.825 kb on - strand, within EX28DRAFT_0812 at 815.826 kb on + strand, within EX28DRAFT_0812 at 815.849 kb on + strand, within EX28DRAFT_0812 at 815.886 kb on + strand, within EX28DRAFT_0812 at 815.886 kb on + strand, within EX28DRAFT_0812 at 815.911 kb on - strand, within EX28DRAFT_0812 at 815.964 kb on - strand, within EX28DRAFT_0812 at 815.964 kb on - strand, within EX28DRAFT_0812 at 815.990 kb on + strand, within EX28DRAFT_0812 at 815.994 kb on + strand, within EX28DRAFT_0812 at 816.037 kb on - strand, within EX28DRAFT_0812 at 816.037 kb on - strand, within EX28DRAFT_0812 at 816.037 kb on - strand, within EX28DRAFT_0812 at 816.042 kb on - strand, within EX28DRAFT_0812 at 816.042 kb on - strand, within EX28DRAFT_0812 at 816.187 kb on - strand, within EX28DRAFT_0812 at 816.187 kb on - strand, within EX28DRAFT_0812 at 816.247 kb on + strand at 816.271 kb on - strand at 816.281 kb on - strand at 816.323 kb on + strand at 816.352 kb on + strand at 816.356 kb on - strand at 816.407 kb on + strand at 816.410 kb on + strand at 816.429 kb on + strand at 816.437 kb on - strand at 816.501 kb on + strand, within EX28DRAFT_0813 at 816.502 kb on - strand, within EX28DRAFT_0813 at 816.647 kb on + strand, within EX28DRAFT_0813 at 816.832 kb on - strand at 816.868 kb on + strand at 816.868 kb on + strand at 817.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 814,641 + +0.8 814,694 + -1.3 814,716 + +0.3 814,716 + +1.0 814,716 + -0.4 814,716 + -0.2 814,800 + +0.5 814,955 - EX28DRAFT_0811 0.38 +0.1 814,991 + EX28DRAFT_0811 0.45 +1.0 814,991 + EX28DRAFT_0811 0.45 -1.2 814,991 + EX28DRAFT_0811 0.45 +0.4 815,042 - EX28DRAFT_0811 0.55 -1.1 815,043 + EX28DRAFT_0811 0.55 +0.4 815,043 + EX28DRAFT_0811 0.55 -0.5 815,043 + EX28DRAFT_0811 0.55 -0.2 815,044 - EX28DRAFT_0811 0.55 -0.4 815,182 + EX28DRAFT_0811 0.82 +1.1 815,303 + -1.3 815,366 - +0.5 815,366 - -1.7 815,447 - EX28DRAFT_0812 0.16 -2.2 815,620 - EX28DRAFT_0812 0.32 -0.5 815,641 - EX28DRAFT_0812 0.34 -0.5 815,644 - EX28DRAFT_0812 0.34 -0.6 815,644 - EX28DRAFT_0812 0.34 -2.0 815,655 + EX28DRAFT_0812 0.35 -0.9 815,656 - EX28DRAFT_0812 0.35 -0.0 815,818 + EX28DRAFT_0812 0.50 -0.1 815,818 + EX28DRAFT_0812 0.50 +1.0 815,819 - EX28DRAFT_0812 0.50 -1.6 815,819 - EX28DRAFT_0812 0.50 +0.1 815,819 - EX28DRAFT_0812 0.50 +0.6 815,824 + EX28DRAFT_0812 0.51 -0.1 815,824 + EX28DRAFT_0812 0.51 +0.4 815,824 + EX28DRAFT_0812 0.51 -0.7 815,824 + EX28DRAFT_0812 0.51 -0.3 815,825 - EX28DRAFT_0812 0.51 +0.0 815,826 + EX28DRAFT_0812 0.51 +1.3 815,849 + EX28DRAFT_0812 0.53 +0.6 815,886 + EX28DRAFT_0812 0.56 -0.7 815,886 + EX28DRAFT_0812 0.56 -0.9 815,911 - EX28DRAFT_0812 0.59 -0.6 815,964 - EX28DRAFT_0812 0.64 +0.2 815,964 - EX28DRAFT_0812 0.64 +0.1 815,990 + EX28DRAFT_0812 0.66 -0.2 815,994 + EX28DRAFT_0812 0.66 +0.1 816,037 - EX28DRAFT_0812 0.70 -0.1 816,037 - EX28DRAFT_0812 0.70 -0.2 816,037 - EX28DRAFT_0812 0.70 +0.2 816,042 - EX28DRAFT_0812 0.71 -0.5 816,042 - EX28DRAFT_0812 0.71 +0.4 816,187 - EX28DRAFT_0812 0.84 -0.2 816,187 - EX28DRAFT_0812 0.84 +0.3 816,247 + +0.5 816,271 - -0.1 816,281 - -0.6 816,323 + -2.2 816,352 + +1.5 816,356 - -0.5 816,407 + -0.0 816,410 + -0.7 816,429 + -0.3 816,437 - +0.9 816,501 + EX28DRAFT_0813 0.16 +0.4 816,502 - EX28DRAFT_0813 0.16 -0.3 816,647 + EX28DRAFT_0813 0.49 -0.5 816,832 - +0.0 816,868 + -0.1 816,868 + +0.3 817,151 + -0.1
Or see this region's nucleotide sequence