Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0662 and EX28DRAFT_0663 are separated by 19 nucleotides EX28DRAFT_0663 and EX28DRAFT_0664 are separated by 104 nucleotides EX28DRAFT_0664 and EX28DRAFT_0665 are separated by 429 nucleotides
EX28DRAFT_0662: EX28DRAFT_0662 - Chemotaxis protein histidine kinase and related kinases, at 656,025 to 658,061
_0662
EX28DRAFT_0663: EX28DRAFT_0663 - Chemotaxis signal transduction protein, at 658,081 to 658,584
_0663
EX28DRAFT_0664: EX28DRAFT_0664 - Na+/H+-dicarboxylate symporters, at 658,689 to 659,954
_0664
EX28DRAFT_0665: EX28DRAFT_0665 - Uncharacterized secreted protein, at 660,384 to 660,956
_0665
Position (kb) 658
659
660 Strain fitness (log2 ratio) -1
0
1 at 657.913 kb on + strand at 657.914 kb on - strand at 657.914 kb on - strand at 658.048 kb on - strand at 658.048 kb on - strand at 658.063 kb on + strand at 658.064 kb on - strand at 658.075 kb on - strand at 658.077 kb on + strand at 658.243 kb on - strand, within EX28DRAFT_0663 at 658.324 kb on + strand, within EX28DRAFT_0663 at 658.325 kb on - strand, within EX28DRAFT_0663 at 658.577 kb on + strand at 658.578 kb on - strand at 658.587 kb on - strand at 658.691 kb on - strand at 658.705 kb on - strand at 658.769 kb on + strand at 658.769 kb on + strand at 658.769 kb on + strand at 658.788 kb on - strand at 658.859 kb on + strand, within EX28DRAFT_0664 at 658.984 kb on + strand, within EX28DRAFT_0664 at 658.984 kb on + strand, within EX28DRAFT_0664 at 659.021 kb on - strand, within EX28DRAFT_0664 at 659.021 kb on - strand, within EX28DRAFT_0664 at 659.219 kb on - strand, within EX28DRAFT_0664 at 659.219 kb on - strand, within EX28DRAFT_0664 at 659.263 kb on + strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.264 kb on - strand, within EX28DRAFT_0664 at 659.287 kb on + strand, within EX28DRAFT_0664 at 659.288 kb on - strand, within EX28DRAFT_0664 at 659.362 kb on + strand, within EX28DRAFT_0664 at 659.362 kb on + strand, within EX28DRAFT_0664 at 659.363 kb on - strand, within EX28DRAFT_0664 at 659.363 kb on - strand, within EX28DRAFT_0664 at 659.363 kb on - strand, within EX28DRAFT_0664 at 659.372 kb on - strand, within EX28DRAFT_0664 at 659.394 kb on - strand, within EX28DRAFT_0664 at 659.670 kb on - strand, within EX28DRAFT_0664 at 659.751 kb on - strand, within EX28DRAFT_0664 at 659.832 kb on - strand at 659.834 kb on + strand at 659.835 kb on - strand at 659.873 kb on - strand at 659.873 kb on - strand at 659.873 kb on - strand at 659.873 kb on - strand at 659.873 kb on - strand at 659.873 kb on - strand at 659.917 kb on - strand at 659.969 kb on + strand at 659.985 kb on - strand at 659.997 kb on + strand at 659.997 kb on + strand at 659.997 kb on + strand at 659.998 kb on - strand at 660.001 kb on + strand at 660.001 kb on + strand at 660.002 kb on - strand at 660.003 kb on + strand at 660.149 kb on - strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.230 kb on + strand at 660.231 kb on - strand at 660.278 kb on + strand at 660.382 kb on - strand at 660.540 kb on - strand, within EX28DRAFT_0665 at 660.591 kb on - strand, within EX28DRAFT_0665 at 660.591 kb on - strand, within EX28DRAFT_0665 at 660.591 kb on - strand, within EX28DRAFT_0665 at 660.654 kb on + strand, within EX28DRAFT_0665 at 660.654 kb on + strand, within EX28DRAFT_0665 at 660.654 kb on + strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.655 kb on - strand, within EX28DRAFT_0665 at 660.656 kb on + strand, within EX28DRAFT_0665 at 660.657 kb on - strand, within EX28DRAFT_0665 at 660.658 kb on - strand, within EX28DRAFT_0665 at 660.781 kb on - strand, within EX28DRAFT_0665 at 660.861 kb on + strand, within EX28DRAFT_0665 at 660.921 kb on + strand at 660.952 kb on - strand at 660.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 657,913 + -0.2 657,914 - -1.4 657,914 - -0.1 658,048 - -0.1 658,048 - -0.8 658,063 + +1.1 658,064 - -0.7 658,075 - -0.6 658,077 + +0.9 658,243 - EX28DRAFT_0663 0.32 -0.1 658,324 + EX28DRAFT_0663 0.48 -0.2 658,325 - EX28DRAFT_0663 0.48 +0.6 658,577 + -0.1 658,578 - -0.4 658,587 - +0.3 658,691 - -0.1 658,705 - +0.3 658,769 + -0.3 658,769 + -0.7 658,769 + +0.1 658,788 - -0.2 658,859 + EX28DRAFT_0664 0.13 -0.3 658,984 + EX28DRAFT_0664 0.23 -0.3 658,984 + EX28DRAFT_0664 0.23 -0.1 659,021 - EX28DRAFT_0664 0.26 -0.1 659,021 - EX28DRAFT_0664 0.26 -0.2 659,219 - EX28DRAFT_0664 0.42 -0.4 659,219 - EX28DRAFT_0664 0.42 -0.4 659,263 + EX28DRAFT_0664 0.45 -0.5 659,264 - EX28DRAFT_0664 0.45 +0.9 659,264 - EX28DRAFT_0664 0.45 -0.2 659,264 - EX28DRAFT_0664 0.45 -1.2 659,264 - EX28DRAFT_0664 0.45 +0.4 659,264 - EX28DRAFT_0664 0.45 -0.9 659,287 + EX28DRAFT_0664 0.47 +0.3 659,288 - EX28DRAFT_0664 0.47 -0.3 659,362 + EX28DRAFT_0664 0.53 -0.3 659,362 + EX28DRAFT_0664 0.53 +0.1 659,363 - EX28DRAFT_0664 0.53 -0.1 659,363 - EX28DRAFT_0664 0.53 +1.4 659,363 - EX28DRAFT_0664 0.53 +0.1 659,372 - EX28DRAFT_0664 0.54 +0.1 659,394 - EX28DRAFT_0664 0.56 -0.8 659,670 - EX28DRAFT_0664 0.77 -0.7 659,751 - EX28DRAFT_0664 0.84 -0.3 659,832 - +0.7 659,834 + -0.5 659,835 - -0.7 659,873 - -1.2 659,873 - -0.4 659,873 - +0.2 659,873 - +0.9 659,873 - +0.2 659,873 - -0.1 659,917 - +0.1 659,969 + -0.1 659,985 - -0.7 659,997 + +0.5 659,997 + -0.1 659,997 + -0.4 659,998 - -0.2 660,001 + +0.0 660,001 + -0.3 660,002 - +0.3 660,003 + -0.3 660,149 - +0.4 660,230 + -0.2 660,230 + +0.3 660,230 + -0.8 660,230 + -0.2 660,230 + +0.0 660,231 - -0.1 660,278 + -0.8 660,382 - -0.9 660,540 - EX28DRAFT_0665 0.27 -0.3 660,591 - EX28DRAFT_0665 0.36 -0.1 660,591 - EX28DRAFT_0665 0.36 -0.9 660,591 - EX28DRAFT_0665 0.36 +1.7 660,654 + EX28DRAFT_0665 0.47 -1.7 660,654 + EX28DRAFT_0665 0.47 +1.5 660,654 + EX28DRAFT_0665 0.47 +0.4 660,655 - EX28DRAFT_0665 0.47 +0.1 660,655 - EX28DRAFT_0665 0.47 +0.1 660,655 - EX28DRAFT_0665 0.47 +1.0 660,655 - EX28DRAFT_0665 0.47 +0.4 660,656 + EX28DRAFT_0665 0.47 -0.0 660,657 - EX28DRAFT_0665 0.48 -0.2 660,658 - EX28DRAFT_0665 0.48 -0.6 660,781 - EX28DRAFT_0665 0.69 +0.6 660,861 + EX28DRAFT_0665 0.83 -0.5 660,921 + +1.3 660,952 - -0.3 660,952 - +1.7
Or see this region's nucleotide sequence