Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0650

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0648 and EX28DRAFT_0649 are separated by 425 nucleotidesEX28DRAFT_0649 and EX28DRAFT_0650 are separated by 42 nucleotidesEX28DRAFT_0650 and EX28DRAFT_0651 are separated by 590 nucleotides EX28DRAFT_0648: EX28DRAFT_0648 - YecR-like lipoprotein, at 641,675 to 642,013 _0648 EX28DRAFT_0649: EX28DRAFT_0649 - Protein of unknown function (DUF2766), at 642,439 to 642,690 _0649 EX28DRAFT_0650: EX28DRAFT_0650 - anaerobic c4-dicarboxylate membrane transporter family protein, at 642,733 to 644,076 _0650 EX28DRAFT_0651: EX28DRAFT_0651 - Ferritin-like protein, at 644,667 to 645,170 _0651 Position (kb) 642 643 644 645Strain fitness (log2 ratio) -2 -1 0 1at 641.818 kb on - strand, within EX28DRAFT_0648at 641.858 kb on + strand, within EX28DRAFT_0648at 641.858 kb on + strand, within EX28DRAFT_0648at 641.859 kb on - strand, within EX28DRAFT_0648at 641.859 kb on - strand, within EX28DRAFT_0648at 641.859 kb on - strand, within EX28DRAFT_0648at 641.862 kb on + strand, within EX28DRAFT_0648at 641.862 kb on + strand, within EX28DRAFT_0648at 641.863 kb on - strand, within EX28DRAFT_0648at 641.863 kb on - strand, within EX28DRAFT_0648at 641.863 kb on - strand, within EX28DRAFT_0648at 641.874 kb on + strand, within EX28DRAFT_0648at 641.962 kb on + strand, within EX28DRAFT_0648at 641.962 kb on + strand, within EX28DRAFT_0648at 641.966 kb on - strand, within EX28DRAFT_0648at 641.966 kb on - strand, within EX28DRAFT_0648at 642.037 kb on + strandat 642.409 kb on + strandat 642.410 kb on - strandat 642.422 kb on - strandat 642.426 kb on - strandat 642.564 kb on + strand, within EX28DRAFT_0649at 642.564 kb on + strand, within EX28DRAFT_0649at 642.564 kb on + strand, within EX28DRAFT_0649at 642.564 kb on + strand, within EX28DRAFT_0649at 642.564 kb on + strand, within EX28DRAFT_0649at 642.713 kb on + strandat 642.713 kb on + strandat 642.713 kb on + strandat 642.713 kb on + strandat 642.713 kb on + strandat 642.713 kb on + strandat 642.713 kb on + strandat 642.714 kb on - strandat 642.714 kb on - strandat 642.714 kb on - strandat 642.714 kb on - strandat 642.714 kb on - strandat 642.734 kb on + strandat 642.805 kb on - strandat 642.908 kb on + strand, within EX28DRAFT_0650at 643.037 kb on + strand, within EX28DRAFT_0650at 643.037 kb on + strand, within EX28DRAFT_0650at 643.082 kb on - strand, within EX28DRAFT_0650at 643.185 kb on + strand, within EX28DRAFT_0650at 643.204 kb on - strand, within EX28DRAFT_0650at 643.234 kb on + strand, within EX28DRAFT_0650at 643.235 kb on - strand, within EX28DRAFT_0650at 643.235 kb on - strand, within EX28DRAFT_0650at 643.235 kb on - strand, within EX28DRAFT_0650at 643.289 kb on - strand, within EX28DRAFT_0650at 643.402 kb on + strand, within EX28DRAFT_0650at 643.426 kb on - strand, within EX28DRAFT_0650at 643.469 kb on - strand, within EX28DRAFT_0650at 643.748 kb on + strand, within EX28DRAFT_0650at 643.749 kb on - strand, within EX28DRAFT_0650at 643.972 kb on + strandat 643.972 kb on + strandat 643.973 kb on - strandat 643.978 kb on - strandat 643.995 kb on + strandat 643.999 kb on + strandat 644.097 kb on + strandat 644.097 kb on + strandat 644.097 kb on + strandat 644.097 kb on + strandat 644.102 kb on - strandat 644.105 kb on + strandat 644.577 kb on + strandat 644.577 kb on + strandat 644.577 kb on + strandat 644.578 kb on - strandat 644.623 kb on - strandat 644.660 kb on + strandat 644.724 kb on + strand, within EX28DRAFT_0651at 644.725 kb on - strand, within EX28DRAFT_0651at 644.744 kb on + strand, within EX28DRAFT_0651at 644.811 kb on + strand, within EX28DRAFT_0651at 644.828 kb on + strand, within EX28DRAFT_0651at 645.011 kb on + strand, within EX28DRAFT_0651

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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641,818 - EX28DRAFT_0648 0.42 -0.7
641,858 + EX28DRAFT_0648 0.54 -0.3
641,858 + EX28DRAFT_0648 0.54 +0.7
641,859 - EX28DRAFT_0648 0.54 +0.3
641,859 - EX28DRAFT_0648 0.54 +1.0
641,859 - EX28DRAFT_0648 0.54 -0.1
641,862 + EX28DRAFT_0648 0.55 -0.4
641,862 + EX28DRAFT_0648 0.55 +0.1
641,863 - EX28DRAFT_0648 0.55 +0.6
641,863 - EX28DRAFT_0648 0.55 +0.0
641,863 - EX28DRAFT_0648 0.55 -0.4
641,874 + EX28DRAFT_0648 0.59 -0.6
641,962 + EX28DRAFT_0648 0.85 -1.0
641,962 + EX28DRAFT_0648 0.85 -0.1
641,966 - EX28DRAFT_0648 0.86 -1.3
641,966 - EX28DRAFT_0648 0.86 -0.2
642,037 + -0.6
642,409 + +0.7
642,410 - +0.1
642,422 - -0.3
642,426 - +0.1
642,564 + EX28DRAFT_0649 0.50 -0.5
642,564 + EX28DRAFT_0649 0.50 -0.1
642,564 + EX28DRAFT_0649 0.50 -0.1
642,564 + EX28DRAFT_0649 0.50 -0.2
642,564 + EX28DRAFT_0649 0.50 +0.1
642,713 + +1.5
642,713 + -0.1
642,713 + +0.7
642,713 + +0.1
642,713 + -0.3
642,713 + -1.0
642,713 + +0.5
642,714 - -0.5
642,714 - +0.9
642,714 - -0.5
642,714 - -0.7
642,714 - -2.2
642,734 + -0.1
642,805 - +0.4
642,908 + EX28DRAFT_0650 0.13 +0.8
643,037 + EX28DRAFT_0650 0.23 -0.4
643,037 + EX28DRAFT_0650 0.23 -0.8
643,082 - EX28DRAFT_0650 0.26 +0.0
643,185 + EX28DRAFT_0650 0.34 -0.4
643,204 - EX28DRAFT_0650 0.35 -0.4
643,234 + EX28DRAFT_0650 0.37 +0.1
643,235 - EX28DRAFT_0650 0.37 +0.1
643,235 - EX28DRAFT_0650 0.37 -0.0
643,235 - EX28DRAFT_0650 0.37 +0.3
643,289 - EX28DRAFT_0650 0.41 -0.5
643,402 + EX28DRAFT_0650 0.50 +0.1
643,426 - EX28DRAFT_0650 0.52 +0.3
643,469 - EX28DRAFT_0650 0.55 +1.1
643,748 + EX28DRAFT_0650 0.76 -0.0
643,749 - EX28DRAFT_0650 0.76 -0.2
643,972 + -1.0
643,972 + +0.6
643,973 - -0.1
643,978 - -1.3
643,995 + +0.0
643,999 + -0.4
644,097 + +1.5
644,097 + -0.4
644,097 + -0.2
644,097 + +0.3
644,102 - -0.4
644,105 + -0.5
644,577 + +0.2
644,577 + +0.2
644,577 + -0.6
644,578 - -0.2
644,623 - -0.8
644,660 + -0.7
644,724 + EX28DRAFT_0651 0.11 -0.8
644,725 - EX28DRAFT_0651 0.12 +0.4
644,744 + EX28DRAFT_0651 0.15 +0.4
644,811 + EX28DRAFT_0651 0.29 +0.2
644,828 + EX28DRAFT_0651 0.32 -1.3
645,011 + EX28DRAFT_0651 0.68 +0.0

Or see this region's nucleotide sequence