Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0625

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0624 and EX28DRAFT_0625 are separated by 129 nucleotidesEX28DRAFT_0625 and EX28DRAFT_0626 are separated by 54 nucleotidesEX28DRAFT_0626 and EX28DRAFT_0627 are separated by 86 nucleotides EX28DRAFT_0624: EX28DRAFT_0624 - hypothetical protein, at 621,623 to 622,828 _0624 EX28DRAFT_0625: EX28DRAFT_0625 - RNA polymerase sigma factor, FliA/WhiG family, at 622,958 to 623,677 _0625 EX28DRAFT_0626: EX28DRAFT_0626 - flagellar regulatory protein FliZ, at 623,732 to 624,283 _0626 EX28DRAFT_0627: EX28DRAFT_0627 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 624,370 to 625,170 _0627 Position (kb) 622 623 624Strain fitness (log2 ratio) -3 -2 -1 0 1at 622.039 kb on + strand, within EX28DRAFT_0624at 622.039 kb on + strand, within EX28DRAFT_0624at 622.039 kb on + strand, within EX28DRAFT_0624at 622.039 kb on + strand, within EX28DRAFT_0624at 622.040 kb on - strand, within EX28DRAFT_0624at 622.175 kb on + strand, within EX28DRAFT_0624at 622.253 kb on + strand, within EX28DRAFT_0624at 622.322 kb on + strand, within EX28DRAFT_0624at 622.515 kb on - strand, within EX28DRAFT_0624at 622.556 kb on + strand, within EX28DRAFT_0624at 622.557 kb on - strand, within EX28DRAFT_0624at 622.609 kb on + strand, within EX28DRAFT_0624at 622.620 kb on + strand, within EX28DRAFT_0624at 622.638 kb on - strand, within EX28DRAFT_0624at 622.638 kb on - strand, within EX28DRAFT_0624at 622.645 kb on + strand, within EX28DRAFT_0624at 622.696 kb on + strand, within EX28DRAFT_0624at 622.697 kb on - strand, within EX28DRAFT_0624at 622.699 kb on + strand, within EX28DRAFT_0624at 622.741 kb on + strandat 622.774 kb on + strandat 622.775 kb on - strandat 622.776 kb on + strandat 622.776 kb on + strandat 622.776 kb on + strandat 622.776 kb on + strandat 622.777 kb on - strandat 622.777 kb on - strandat 622.777 kb on - strandat 622.939 kb on + strandat 622.939 kb on + strandat 622.940 kb on - strandat 622.954 kb on + strandat 622.970 kb on + strandat 622.971 kb on - strandat 622.986 kb on + strandat 622.986 kb on + strandat 622.987 kb on - strandat 623.015 kb on + strandat 623.015 kb on + strandat 623.016 kb on - strandat 623.115 kb on + strand, within EX28DRAFT_0625at 623.115 kb on + strand, within EX28DRAFT_0625at 623.116 kb on - strand, within EX28DRAFT_0625at 623.159 kb on - strand, within EX28DRAFT_0625at 623.166 kb on - strand, within EX28DRAFT_0625at 623.348 kb on + strand, within EX28DRAFT_0625at 623.374 kb on + strand, within EX28DRAFT_0625at 623.375 kb on - strand, within EX28DRAFT_0625at 623.375 kb on - strand, within EX28DRAFT_0625at 623.377 kb on + strand, within EX28DRAFT_0625at 623.393 kb on + strand, within EX28DRAFT_0625at 623.475 kb on + strand, within EX28DRAFT_0625at 623.475 kb on + strand, within EX28DRAFT_0625at 623.475 kb on + strand, within EX28DRAFT_0625at 623.512 kb on + strand, within EX28DRAFT_0625at 623.544 kb on + strand, within EX28DRAFT_0625at 623.544 kb on + strand, within EX28DRAFT_0625at 623.545 kb on - strand, within EX28DRAFT_0625at 623.555 kb on + strand, within EX28DRAFT_0625at 623.556 kb on - strand, within EX28DRAFT_0625at 623.556 kb on - strand, within EX28DRAFT_0625at 623.676 kb on - strandat 623.729 kb on - strandat 623.750 kb on - strandat 623.785 kb on + strandat 623.816 kb on - strand, within EX28DRAFT_0626at 624.059 kb on + strand, within EX28DRAFT_0626at 624.060 kb on - strand, within EX28DRAFT_0626at 624.107 kb on - strand, within EX28DRAFT_0626at 624.206 kb on + strand, within EX28DRAFT_0626at 624.207 kb on - strand, within EX28DRAFT_0626at 624.216 kb on - strand, within EX28DRAFT_0626at 624.216 kb on - strand, within EX28DRAFT_0626at 624.240 kb on + strandat 624.275 kb on - strandat 624.276 kb on + strandat 624.276 kb on + strandat 624.277 kb on - strandat 624.277 kb on - strandat 624.278 kb on + strandat 624.278 kb on + strandat 624.279 kb on - strandat 624.340 kb on - strandat 624.355 kb on + strandat 624.356 kb on - strandat 624.356 kb on - strandat 624.356 kb on - strandat 624.369 kb on + strandat 624.480 kb on - strand, within EX28DRAFT_0627at 624.643 kb on - strand, within EX28DRAFT_0627at 624.670 kb on - strand, within EX28DRAFT_0627

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
622,039 + EX28DRAFT_0624 0.34 -0.8
622,039 + EX28DRAFT_0624 0.34 -1.2
622,039 + EX28DRAFT_0624 0.34 +0.1
622,039 + EX28DRAFT_0624 0.34 -1.0
622,040 - EX28DRAFT_0624 0.35 -0.2
622,175 + EX28DRAFT_0624 0.46 +0.4
622,253 + EX28DRAFT_0624 0.52 +0.6
622,322 + EX28DRAFT_0624 0.58 +1.6
622,515 - EX28DRAFT_0624 0.74 -0.9
622,556 + EX28DRAFT_0624 0.77 +0.0
622,557 - EX28DRAFT_0624 0.77 -0.3
622,609 + EX28DRAFT_0624 0.82 -0.1
622,620 + EX28DRAFT_0624 0.83 +0.2
622,638 - EX28DRAFT_0624 0.84 +1.3
622,638 - EX28DRAFT_0624 0.84 -0.0
622,645 + EX28DRAFT_0624 0.85 -0.3
622,696 + EX28DRAFT_0624 0.89 +0.1
622,697 - EX28DRAFT_0624 0.89 +0.5
622,699 + EX28DRAFT_0624 0.89 -0.1
622,741 + -0.1
622,774 + +0.5
622,775 - -0.9
622,776 + -0.2
622,776 + -0.3
622,776 + +0.4
622,776 + -1.2
622,777 - -0.4
622,777 - +0.4
622,777 - +0.3
622,939 + +0.1
622,939 + +0.1
622,940 - +0.0
622,954 + +0.2
622,970 + +0.5
622,971 - -0.0
622,986 + -0.1
622,986 + -0.0
622,987 - -0.5
623,015 + -0.1
623,015 + -0.1
623,016 - +0.3
623,115 + EX28DRAFT_0625 0.22 +0.1
623,115 + EX28DRAFT_0625 0.22 -0.1
623,116 - EX28DRAFT_0625 0.22 +0.1
623,159 - EX28DRAFT_0625 0.28 -0.5
623,166 - EX28DRAFT_0625 0.29 -0.8
623,348 + EX28DRAFT_0625 0.54 -0.9
623,374 + EX28DRAFT_0625 0.58 +0.4
623,375 - EX28DRAFT_0625 0.58 -1.3
623,375 - EX28DRAFT_0625 0.58 -0.6
623,377 + EX28DRAFT_0625 0.58 +0.1
623,393 + EX28DRAFT_0625 0.60 -1.5
623,475 + EX28DRAFT_0625 0.72 -0.8
623,475 + EX28DRAFT_0625 0.72 -1.3
623,475 + EX28DRAFT_0625 0.72 -1.1
623,512 + EX28DRAFT_0625 0.77 -0.9
623,544 + EX28DRAFT_0625 0.81 -0.5
623,544 + EX28DRAFT_0625 0.81 -0.3
623,545 - EX28DRAFT_0625 0.82 -0.5
623,555 + EX28DRAFT_0625 0.83 +0.1
623,556 - EX28DRAFT_0625 0.83 -0.1
623,556 - EX28DRAFT_0625 0.83 -0.3
623,676 - +0.3
623,729 - -0.6
623,750 - -0.4
623,785 + -0.7
623,816 - EX28DRAFT_0626 0.15 -0.1
624,059 + EX28DRAFT_0626 0.59 +0.6
624,060 - EX28DRAFT_0626 0.59 -0.2
624,107 - EX28DRAFT_0626 0.68 -0.1
624,206 + EX28DRAFT_0626 0.86 -3.0
624,207 - EX28DRAFT_0626 0.86 -0.3
624,216 - EX28DRAFT_0626 0.88 -0.5
624,216 - EX28DRAFT_0626 0.88 +0.1
624,240 + -1.2
624,275 - +0.8
624,276 + +0.3
624,276 + -0.0
624,277 - +0.3
624,277 - +0.1
624,278 + +0.5
624,278 + -0.6
624,279 - -0.5
624,340 - -0.5
624,355 + +0.4
624,356 - -0.1
624,356 - -0.5
624,356 - -0.6
624,369 + -0.1
624,480 - EX28DRAFT_0627 0.14 -0.6
624,643 - EX28DRAFT_0627 0.34 -0.4
624,670 - EX28DRAFT_0627 0.37 -1.0

Or see this region's nucleotide sequence