Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0515 and EX28DRAFT_0516 are separated by 53 nucleotides EX28DRAFT_0516 and EX28DRAFT_0517 overlap by 1 nucleotides EX28DRAFT_0517 and EX28DRAFT_0518 are separated by 0 nucleotides EX28DRAFT_0518 and EX28DRAFT_0519 are separated by 38 nucleotides
EX28DRAFT_0515: EX28DRAFT_0515 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 508,489 to 509,571
_0515
EX28DRAFT_0516: EX28DRAFT_0516 - Nucleoside-diphosphate-sugar epimerases, at 509,625 to 510,569
_0516
EX28DRAFT_0517: EX28DRAFT_0517 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 510,569 to 511,603
_0517
EX28DRAFT_0518: EX28DRAFT_0518 - Bacterial transferase hexapeptide (six repeats), at 511,604 to 512,164
_0518
EX28DRAFT_0519: EX28DRAFT_0519 - Predicted nucleoside-diphosphate sugar epimerases, at 512,203 to 514,089
_0519
Position (kb) 510
511
512 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 509.586 kb on + strand at 509.599 kb on - strand at 509.704 kb on + strand at 509.762 kb on + strand, within EX28DRAFT_0516 at 509.807 kb on + strand, within EX28DRAFT_0516 at 509.838 kb on - strand, within EX28DRAFT_0516 at 509.962 kb on + strand, within EX28DRAFT_0516 at 509.963 kb on - strand, within EX28DRAFT_0516 at 510.033 kb on + strand, within EX28DRAFT_0516 at 510.038 kb on + strand, within EX28DRAFT_0516 at 510.039 kb on - strand, within EX28DRAFT_0516 at 510.039 kb on - strand, within EX28DRAFT_0516 at 510.106 kb on + strand, within EX28DRAFT_0516 at 510.381 kb on + strand, within EX28DRAFT_0516 at 510.993 kb on - strand, within EX28DRAFT_0517 at 511.034 kb on - strand, within EX28DRAFT_0517 at 511.093 kb on - strand, within EX28DRAFT_0517 at 511.093 kb on - strand, within EX28DRAFT_0517 at 511.334 kb on - strand, within EX28DRAFT_0517 at 511.337 kb on - strand, within EX28DRAFT_0517 at 511.771 kb on + strand, within EX28DRAFT_0518 at 511.771 kb on + strand, within EX28DRAFT_0518 at 511.772 kb on - strand, within EX28DRAFT_0518 at 511.807 kb on + strand, within EX28DRAFT_0518 at 511.945 kb on - strand, within EX28DRAFT_0518 at 511.972 kb on + strand, within EX28DRAFT_0518 at 511.977 kb on + strand, within EX28DRAFT_0518 at 511.981 kb on + strand, within EX28DRAFT_0518 at 511.982 kb on - strand, within EX28DRAFT_0518 at 511.993 kb on + strand, within EX28DRAFT_0518 at 512.035 kb on - strand, within EX28DRAFT_0518 at 512.162 kb on + strand at 512.249 kb on + strand at 512.268 kb on - strand at 512.268 kb on - strand at 512.420 kb on + strand, within EX28DRAFT_0519 at 512.425 kb on + strand, within EX28DRAFT_0519 at 512.429 kb on + strand, within EX28DRAFT_0519 at 512.450 kb on + strand, within EX28DRAFT_0519 at 512.558 kb on + strand, within EX28DRAFT_0519 at 512.558 kb on + strand, within EX28DRAFT_0519 at 512.559 kb on - strand, within EX28DRAFT_0519
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 509,586 + -2.1 509,599 - +1.5 509,704 + +0.1 509,762 + EX28DRAFT_0516 0.14 -0.3 509,807 + EX28DRAFT_0516 0.19 +0.1 509,838 - EX28DRAFT_0516 0.23 +0.5 509,962 + EX28DRAFT_0516 0.36 -0.3 509,963 - EX28DRAFT_0516 0.36 -0.1 510,033 + EX28DRAFT_0516 0.43 -0.5 510,038 + EX28DRAFT_0516 0.44 +0.3 510,039 - EX28DRAFT_0516 0.44 +0.1 510,039 - EX28DRAFT_0516 0.44 -0.6 510,106 + EX28DRAFT_0516 0.51 -0.3 510,381 + EX28DRAFT_0516 0.80 +0.4 510,993 - EX28DRAFT_0517 0.41 -1.0 511,034 - EX28DRAFT_0517 0.45 -1.0 511,093 - EX28DRAFT_0517 0.51 +0.4 511,093 - EX28DRAFT_0517 0.51 -0.4 511,334 - EX28DRAFT_0517 0.74 -0.6 511,337 - EX28DRAFT_0517 0.74 -1.5 511,771 + EX28DRAFT_0518 0.30 +0.5 511,771 + EX28DRAFT_0518 0.30 -0.6 511,772 - EX28DRAFT_0518 0.30 -0.9 511,807 + EX28DRAFT_0518 0.36 +0.1 511,945 - EX28DRAFT_0518 0.61 -0.7 511,972 + EX28DRAFT_0518 0.66 +1.1 511,977 + EX28DRAFT_0518 0.66 -0.9 511,981 + EX28DRAFT_0518 0.67 +0.9 511,982 - EX28DRAFT_0518 0.67 +0.1 511,993 + EX28DRAFT_0518 0.69 +0.2 512,035 - EX28DRAFT_0518 0.77 -1.2 512,162 + +0.8 512,249 + -3.0 512,268 - -3.1 512,268 - -4.3 512,420 + EX28DRAFT_0519 0.11 -0.7 512,425 + EX28DRAFT_0519 0.12 -0.4 512,429 + EX28DRAFT_0519 0.12 -0.8 512,450 + EX28DRAFT_0519 0.13 -1.5 512,558 + EX28DRAFT_0519 0.19 -0.3 512,558 + EX28DRAFT_0519 0.19 -0.5 512,559 - EX28DRAFT_0519 0.19 -2.4
Or see this region's nucleotide sequence