Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0495 and EX28DRAFT_0496 are separated by 74 nucleotides EX28DRAFT_0496 and EX28DRAFT_0497 overlap by 1 nucleotides EX28DRAFT_0497 and EX28DRAFT_0498 overlap by 4 nucleotides
EX28DRAFT_0495: EX28DRAFT_0495 - capsular exopolysaccharide family, at 486,114 to 488,276
_0495
EX28DRAFT_0496: EX28DRAFT_0496 - colanic acid biosynthesis glycosyl transferase WcaA, at 488,351 to 489,214
_0496
EX28DRAFT_0497: EX28DRAFT_0497 - colanic acid biosynthesis acetyltransferase WcaB, at 489,214 to 489,705
_0497
EX28DRAFT_0498: EX28DRAFT_0498 - colanic acid biosynthesis glycosyl transferase WcaC, at 489,702 to 490,919
_0498
Position (kb) 488
489
490 Strain fitness (log2 ratio) -2
-1
0
1 at 487.395 kb on - strand, within EX28DRAFT_0495 at 487.705 kb on + strand, within EX28DRAFT_0495 at 487.818 kb on + strand, within EX28DRAFT_0495 at 487.819 kb on - strand, within EX28DRAFT_0495 at 487.908 kb on - strand, within EX28DRAFT_0495 at 488.244 kb on + strand at 488.256 kb on + strand at 488.259 kb on - strand at 488.274 kb on + strand at 488.402 kb on + strand at 488.403 kb on - strand at 488.565 kb on - strand, within EX28DRAFT_0496 at 488.565 kb on - strand, within EX28DRAFT_0496 at 488.582 kb on - strand, within EX28DRAFT_0496 at 488.617 kb on + strand, within EX28DRAFT_0496 at 488.618 kb on - strand, within EX28DRAFT_0496 at 488.732 kb on + strand, within EX28DRAFT_0496 at 488.744 kb on + strand, within EX28DRAFT_0496 at 488.744 kb on + strand, within EX28DRAFT_0496 at 488.745 kb on - strand, within EX28DRAFT_0496 at 488.745 kb on - strand, within EX28DRAFT_0496 at 488.745 kb on - strand, within EX28DRAFT_0496 at 488.808 kb on - strand, within EX28DRAFT_0496 at 488.825 kb on + strand, within EX28DRAFT_0496 at 488.825 kb on + strand, within EX28DRAFT_0496 at 488.919 kb on - strand, within EX28DRAFT_0496 at 488.949 kb on - strand, within EX28DRAFT_0496 at 489.094 kb on + strand, within EX28DRAFT_0496 at 489.130 kb on + strand at 489.130 kb on + strand at 489.212 kb on + strand at 489.212 kb on + strand at 489.213 kb on - strand at 489.330 kb on + strand, within EX28DRAFT_0497 at 489.606 kb on + strand, within EX28DRAFT_0497 at 489.609 kb on + strand, within EX28DRAFT_0497 at 489.699 kb on + strand at 489.699 kb on + strand at 489.700 kb on - strand at 489.700 kb on - strand at 489.720 kb on - strand at 489.720 kb on - strand at 489.725 kb on - strand at 489.806 kb on + strand at 490.017 kb on + strand, within EX28DRAFT_0498 at 490.017 kb on + strand, within EX28DRAFT_0498 at 490.018 kb on - strand, within EX28DRAFT_0498 at 490.018 kb on - strand, within EX28DRAFT_0498 at 490.136 kb on + strand, within EX28DRAFT_0498 at 490.163 kb on + strand, within EX28DRAFT_0498 at 490.163 kb on + strand, within EX28DRAFT_0498
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 487,395 - EX28DRAFT_0495 0.59 -0.1 487,705 + EX28DRAFT_0495 0.74 +0.2 487,818 + EX28DRAFT_0495 0.79 -2.1 487,819 - EX28DRAFT_0495 0.79 -0.6 487,908 - EX28DRAFT_0495 0.83 +0.6 488,244 + -0.3 488,256 + -0.0 488,259 - -0.2 488,274 + +0.3 488,402 + +0.8 488,403 - +0.3 488,565 - EX28DRAFT_0496 0.25 +1.5 488,565 - EX28DRAFT_0496 0.25 -0.5 488,582 - EX28DRAFT_0496 0.27 -0.1 488,617 + EX28DRAFT_0496 0.31 +0.0 488,618 - EX28DRAFT_0496 0.31 +1.6 488,732 + EX28DRAFT_0496 0.44 -0.4 488,744 + EX28DRAFT_0496 0.45 +1.1 488,744 + EX28DRAFT_0496 0.45 +1.4 488,745 - EX28DRAFT_0496 0.46 -0.3 488,745 - EX28DRAFT_0496 0.46 -0.5 488,745 - EX28DRAFT_0496 0.46 +1.1 488,808 - EX28DRAFT_0496 0.53 +0.1 488,825 + EX28DRAFT_0496 0.55 +0.1 488,825 + EX28DRAFT_0496 0.55 +0.1 488,919 - EX28DRAFT_0496 0.66 +0.8 488,949 - EX28DRAFT_0496 0.69 -1.3 489,094 + EX28DRAFT_0496 0.86 +0.1 489,130 + +0.7 489,130 + +0.7 489,212 + -0.6 489,212 + +0.9 489,213 - +0.0 489,330 + EX28DRAFT_0497 0.24 -0.7 489,606 + EX28DRAFT_0497 0.80 -0.4 489,609 + EX28DRAFT_0497 0.80 -0.3 489,699 + -0.4 489,699 + -0.4 489,700 - +0.5 489,700 - -0.3 489,720 - -0.8 489,720 - -0.7 489,725 - +0.1 489,806 + +0.2 490,017 + EX28DRAFT_0498 0.26 -0.1 490,017 + EX28DRAFT_0498 0.26 +0.0 490,018 - EX28DRAFT_0498 0.26 +0.8 490,018 - EX28DRAFT_0498 0.26 -0.2 490,136 + EX28DRAFT_0498 0.36 +0.0 490,163 + EX28DRAFT_0498 0.38 -0.7 490,163 + EX28DRAFT_0498 0.38 +0.1
Or see this region's nucleotide sequence