Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0399 and EX28DRAFT_0400 are separated by 180 nucleotides EX28DRAFT_0400 and EX28DRAFT_0401 are separated by 224 nucleotides
EX28DRAFT_0399: EX28DRAFT_0399 - Transcriptional regulator, at 374,018 to 374,884
_0399
EX28DRAFT_0400: EX28DRAFT_0400 - Amino acid transporters, at 375,065 to 376,534
_0400
EX28DRAFT_0401: EX28DRAFT_0401 - Outer membrane receptor for ferrienterochelin and colicins, at 376,759 to 378,729
_0401
Position (kb)
375
376
377 Strain fitness (log2 ratio)
-1
0
1 at 374.217 kb on - strand, within EX28DRAFT_0399 at 374.321 kb on + strand, within EX28DRAFT_0399 at 374.321 kb on + strand, within EX28DRAFT_0399 at 374.322 kb on - strand, within EX28DRAFT_0399 at 374.882 kb on + strand at 374.883 kb on - strand at 374.943 kb on - strand at 374.950 kb on - strand at 374.950 kb on - strand at 374.950 kb on - strand at 374.950 kb on - strand at 374.954 kb on - strand at 374.955 kb on + strand at 374.986 kb on - strand at 375.025 kb on + strand at 375.026 kb on - strand at 375.045 kb on + strand at 375.102 kb on + strand at 375.103 kb on - strand at 375.227 kb on + strand, within EX28DRAFT_0400 at 375.228 kb on - strand, within EX28DRAFT_0400 at 375.230 kb on - strand, within EX28DRAFT_0400 at 375.287 kb on + strand, within EX28DRAFT_0400 at 375.317 kb on + strand, within EX28DRAFT_0400 at 375.369 kb on - strand, within EX28DRAFT_0400 at 375.374 kb on + strand, within EX28DRAFT_0400 at 375.500 kb on + strand, within EX28DRAFT_0400 at 375.501 kb on - strand, within EX28DRAFT_0400 at 375.501 kb on - strand, within EX28DRAFT_0400 at 375.501 kb on - strand, within EX28DRAFT_0400 at 375.798 kb on + strand, within EX28DRAFT_0400 at 375.821 kb on + strand, within EX28DRAFT_0400 at 375.821 kb on + strand, within EX28DRAFT_0400 at 375.821 kb on + strand, within EX28DRAFT_0400 at 375.822 kb on - strand, within EX28DRAFT_0400 at 375.822 kb on - strand, within EX28DRAFT_0400 at 375.891 kb on + strand, within EX28DRAFT_0400 at 376.013 kb on + strand, within EX28DRAFT_0400 at 376.014 kb on - strand, within EX28DRAFT_0400 at 376.035 kb on - strand, within EX28DRAFT_0400 at 376.066 kb on + strand, within EX28DRAFT_0400 at 376.066 kb on + strand, within EX28DRAFT_0400 at 376.175 kb on + strand, within EX28DRAFT_0400 at 376.176 kb on - strand, within EX28DRAFT_0400 at 376.214 kb on - strand, within EX28DRAFT_0400 at 376.282 kb on + strand, within EX28DRAFT_0400 at 376.373 kb on + strand, within EX28DRAFT_0400 at 376.373 kb on + strand, within EX28DRAFT_0400 at 376.373 kb on + strand, within EX28DRAFT_0400 at 376.374 kb on - strand, within EX28DRAFT_0400 at 376.374 kb on - strand, within EX28DRAFT_0400 at 376.425 kb on - strand at 376.525 kb on + strand at 376.526 kb on - strand at 376.604 kb on - strand at 376.605 kb on + strand at 376.605 kb on + strand at 376.730 kb on + strand at 376.736 kb on + strand at 376.741 kb on - strand at 376.753 kb on + strand at 377.022 kb on - strand, within EX28DRAFT_0401 at 377.025 kb on + strand, within EX28DRAFT_0401 at 377.026 kb on - strand, within EX28DRAFT_0401 at 377.047 kb on + strand, within EX28DRAFT_0401 at 377.048 kb on - strand, within EX28DRAFT_0401 at 377.220 kb on + strand, within EX28DRAFT_0401 at 377.221 kb on - strand, within EX28DRAFT_0401 at 377.305 kb on + strand, within EX28DRAFT_0401 at 377.305 kb on + strand, within EX28DRAFT_0401 at 377.305 kb on + strand, within EX28DRAFT_0401 at 377.306 kb on - strand, within EX28DRAFT_0401 at 377.306 kb on - strand, within EX28DRAFT_0401 at 377.320 kb on + strand, within EX28DRAFT_0401 at 377.323 kb on - strand, within EX28DRAFT_0401
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 374,217 - EX28DRAFT_0399 0.23 +0.4 374,321 + EX28DRAFT_0399 0.35 -0.3 374,321 + EX28DRAFT_0399 0.35 -0.6 374,322 - EX28DRAFT_0399 0.35 +0.1 374,882 + +0.8 374,883 - -0.1 374,943 - -0.5 374,950 - +0.4 374,950 - +0.2 374,950 - +0.3 374,950 - +0.3 374,954 - +0.2 374,955 + -0.5 374,986 - +1.0 375,025 + +0.1 375,026 - +0.8 375,045 + -0.5 375,102 + -0.0 375,103 - -0.0 375,227 + EX28DRAFT_0400 0.11 +0.2 375,228 - EX28DRAFT_0400 0.11 +0.2 375,230 - EX28DRAFT_0400 0.11 +0.3 375,287 + EX28DRAFT_0400 0.15 +0.0 375,317 + EX28DRAFT_0400 0.17 +0.3 375,369 - EX28DRAFT_0400 0.21 +0.2 375,374 + EX28DRAFT_0400 0.21 +0.2 375,500 + EX28DRAFT_0400 0.30 -0.1 375,501 - EX28DRAFT_0400 0.30 -0.3 375,501 - EX28DRAFT_0400 0.30 +0.4 375,501 - EX28DRAFT_0400 0.30 -0.9 375,798 + EX28DRAFT_0400 0.50 -0.0 375,821 + EX28DRAFT_0400 0.51 -0.8 375,821 + EX28DRAFT_0400 0.51 +0.6 375,821 + EX28DRAFT_0400 0.51 +0.1 375,822 - EX28DRAFT_0400 0.51 +0.7 375,822 - EX28DRAFT_0400 0.51 +0.3 375,891 + EX28DRAFT_0400 0.56 +0.4 376,013 + EX28DRAFT_0400 0.64 +0.3 376,014 - EX28DRAFT_0400 0.65 +0.6 376,035 - EX28DRAFT_0400 0.66 +0.4 376,066 + EX28DRAFT_0400 0.68 +0.4 376,066 + EX28DRAFT_0400 0.68 +0.0 376,175 + EX28DRAFT_0400 0.76 +0.9 376,176 - EX28DRAFT_0400 0.76 -0.2 376,214 - EX28DRAFT_0400 0.78 +1.3 376,282 + EX28DRAFT_0400 0.83 -0.4 376,373 + EX28DRAFT_0400 0.89 +0.1 376,373 + EX28DRAFT_0400 0.89 +0.2 376,373 + EX28DRAFT_0400 0.89 +0.1 376,374 - EX28DRAFT_0400 0.89 -0.3 376,374 - EX28DRAFT_0400 0.89 -1.2 376,425 - -0.6 376,525 + +0.5 376,526 - -0.8 376,604 - +1.5 376,605 + -0.2 376,605 + -0.2 376,730 + +0.4 376,736 + +0.1 376,741 - -0.0 376,753 + +1.4 377,022 - EX28DRAFT_0401 0.13 +0.1 377,025 + EX28DRAFT_0401 0.13 -0.9 377,026 - EX28DRAFT_0401 0.14 -0.4 377,047 + EX28DRAFT_0401 0.15 -1.1 377,048 - EX28DRAFT_0401 0.15 +0.4 377,220 + EX28DRAFT_0401 0.23 -0.1 377,221 - EX28DRAFT_0401 0.23 +1.0 377,305 + EX28DRAFT_0401 0.28 +0.1 377,305 + EX28DRAFT_0401 0.28 +0.2 377,305 + EX28DRAFT_0401 0.28 -0.9 377,306 - EX28DRAFT_0401 0.28 +0.8 377,306 - EX28DRAFT_0401 0.28 +0.2 377,320 + EX28DRAFT_0401 0.28 -0.3 377,323 - EX28DRAFT_0401 0.29 +1.2
Or see this region's nucleotide sequence