Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0346

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0344 and EX28DRAFT_0345 are separated by 124 nucleotidesEX28DRAFT_0345 and EX28DRAFT_0346 are separated by 93 nucleotidesEX28DRAFT_0346 and EX28DRAFT_0347 are separated by 33 nucleotides EX28DRAFT_0344: EX28DRAFT_0344 - O-succinylbenzoate-CoA ligase, at 306,259 to 307,620 _0344 EX28DRAFT_0345: EX28DRAFT_0345 - YfaZ precursor, at 307,745 to 308,284 _0345 EX28DRAFT_0346: EX28DRAFT_0346 - molybdenum cofactor synthesis domain/competence/damage-inducible protein CinA N-terminal domain, at 308,378 to 309,577 _0346 EX28DRAFT_0347: EX28DRAFT_0347 - glycerol-3-phosphate dehydrogenase, anaerobic, C subunit, at 309,611 to 310,801 _0347 Position (kb) 308 309 310Strain fitness (log2 ratio) -2 -1 0 1 2at 307.566 kb on + strandat 307.566 kb on + strandat 307.567 kb on - strandat 307.619 kb on - strandat 307.621 kb on + strandat 307.635 kb on - strandat 307.638 kb on + strandat 307.646 kb on - strandat 307.719 kb on + strandat 307.719 kb on + strandat 307.720 kb on - strandat 307.722 kb on - strandat 307.724 kb on + strandat 307.725 kb on - strandat 307.725 kb on - strandat 307.785 kb on + strandat 307.836 kb on - strand, within EX28DRAFT_0345at 307.837 kb on + strand, within EX28DRAFT_0345at 307.838 kb on - strand, within EX28DRAFT_0345at 307.990 kb on + strand, within EX28DRAFT_0345at 307.990 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.994 kb on + strand, within EX28DRAFT_0345at 307.995 kb on - strand, within EX28DRAFT_0345at 307.995 kb on - strand, within EX28DRAFT_0345at 307.995 kb on - strand, within EX28DRAFT_0345at 307.996 kb on + strand, within EX28DRAFT_0345at 307.996 kb on + strand, within EX28DRAFT_0345at 307.996 kb on + strand, within EX28DRAFT_0345at 308.090 kb on + strand, within EX28DRAFT_0345at 308.090 kb on + strand, within EX28DRAFT_0345at 308.090 kb on + strand, within EX28DRAFT_0345at 308.091 kb on - strand, within EX28DRAFT_0345at 308.091 kb on - strand, within EX28DRAFT_0345at 308.093 kb on + strand, within EX28DRAFT_0345at 308.093 kb on + strand, within EX28DRAFT_0345at 308.094 kb on - strand, within EX28DRAFT_0345at 308.094 kb on - strand, within EX28DRAFT_0345at 308.283 kb on - strandat 308.283 kb on - strandat 308.345 kb on - strandat 308.345 kb on - strandat 308.346 kb on + strandat 308.347 kb on - strandat 308.363 kb on - strandat 308.376 kb on + strandat 308.377 kb on - strandat 308.383 kb on + strandat 308.432 kb on - strandat 308.848 kb on + strand, within EX28DRAFT_0346at 309.377 kb on + strand, within EX28DRAFT_0346at 309.377 kb on + strand, within EX28DRAFT_0346at 309.377 kb on + strand, within EX28DRAFT_0346at 309.378 kb on - strand, within EX28DRAFT_0346at 309.382 kb on + strand, within EX28DRAFT_0346at 309.383 kb on - strand, within EX28DRAFT_0346at 309.383 kb on - strand, within EX28DRAFT_0346at 309.788 kb on - strand, within EX28DRAFT_0347at 309.854 kb on + strand, within EX28DRAFT_0347at 309.874 kb on + strand, within EX28DRAFT_0347at 309.876 kb on + strand, within EX28DRAFT_0347at 309.877 kb on - strand, within EX28DRAFT_0347at 309.902 kb on - strand, within EX28DRAFT_0347at 309.918 kb on + strand, within EX28DRAFT_0347at 310.070 kb on - strand, within EX28DRAFT_0347at 310.163 kb on - strand, within EX28DRAFT_0347at 310.284 kb on + strand, within EX28DRAFT_0347at 310.284 kb on + strand, within EX28DRAFT_0347at 310.284 kb on + strand, within EX28DRAFT_0347at 310.294 kb on - strand, within EX28DRAFT_0347at 310.326 kb on + strand, within EX28DRAFT_0347at 310.384 kb on - strand, within EX28DRAFT_0347at 310.409 kb on + strand, within EX28DRAFT_0347at 310.409 kb on + strand, within EX28DRAFT_0347at 310.410 kb on - strand, within EX28DRAFT_0347

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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307,566 + -0.0
307,566 + -0.4
307,567 - +0.1
307,619 - +0.4
307,621 + +0.4
307,635 - -0.5
307,638 + -0.0
307,646 - +0.5
307,719 + -0.8
307,719 + -0.4
307,720 - -0.3
307,722 - +0.1
307,724 + -0.3
307,725 - +0.5
307,725 - -0.8
307,785 + -1.8
307,836 - EX28DRAFT_0345 0.17 +0.3
307,837 + EX28DRAFT_0345 0.17 +0.6
307,838 - EX28DRAFT_0345 0.17 +0.4
307,990 + EX28DRAFT_0345 0.45 +0.5
307,990 + EX28DRAFT_0345 0.45 -0.4
307,994 + EX28DRAFT_0345 0.46 +2.1
307,994 + EX28DRAFT_0345 0.46 -0.1
307,994 + EX28DRAFT_0345 0.46 +0.3
307,994 + EX28DRAFT_0345 0.46 +0.3
307,994 + EX28DRAFT_0345 0.46 -0.2
307,994 + EX28DRAFT_0345 0.46 -0.3
307,994 + EX28DRAFT_0345 0.46 -0.9
307,994 + EX28DRAFT_0345 0.46 -0.8
307,995 - EX28DRAFT_0345 0.46 -0.3
307,995 - EX28DRAFT_0345 0.46 -0.5
307,995 - EX28DRAFT_0345 0.46 -0.2
307,996 + EX28DRAFT_0345 0.46 -0.9
307,996 + EX28DRAFT_0345 0.46 -1.2
307,996 + EX28DRAFT_0345 0.46 -0.2
308,090 + EX28DRAFT_0345 0.64 +0.1
308,090 + EX28DRAFT_0345 0.64 -0.0
308,090 + EX28DRAFT_0345 0.64 +0.1
308,091 - EX28DRAFT_0345 0.64 -0.2
308,091 - EX28DRAFT_0345 0.64 +0.0
308,093 + EX28DRAFT_0345 0.64 -0.3
308,093 + EX28DRAFT_0345 0.64 -0.1
308,094 - EX28DRAFT_0345 0.65 -0.2
308,094 - EX28DRAFT_0345 0.65 -0.7
308,283 - -0.4
308,283 - +0.1
308,345 - -0.1
308,345 - +0.2
308,346 + -0.4
308,347 - +0.3
308,363 - +1.1
308,376 + -0.4
308,377 - -0.2
308,383 + +0.2
308,432 - -0.9
308,848 + EX28DRAFT_0346 0.39 +1.1
309,377 + EX28DRAFT_0346 0.83 -1.1
309,377 + EX28DRAFT_0346 0.83 -0.4
309,377 + EX28DRAFT_0346 0.83 -0.7
309,378 - EX28DRAFT_0346 0.83 +1.0
309,382 + EX28DRAFT_0346 0.84 -0.7
309,383 - EX28DRAFT_0346 0.84 -0.6
309,383 - EX28DRAFT_0346 0.84 -0.6
309,788 - EX28DRAFT_0347 0.15 -0.4
309,854 + EX28DRAFT_0347 0.20 -0.3
309,874 + EX28DRAFT_0347 0.22 +0.1
309,876 + EX28DRAFT_0347 0.22 -0.1
309,877 - EX28DRAFT_0347 0.22 -1.0
309,902 - EX28DRAFT_0347 0.24 -0.3
309,918 + EX28DRAFT_0347 0.26 +0.2
310,070 - EX28DRAFT_0347 0.39 -0.8
310,163 - EX28DRAFT_0347 0.46 -0.2
310,284 + EX28DRAFT_0347 0.57 -0.9
310,284 + EX28DRAFT_0347 0.57 +0.2
310,284 + EX28DRAFT_0347 0.57 -0.2
310,294 - EX28DRAFT_0347 0.57 -1.8
310,326 + EX28DRAFT_0347 0.60 -0.8
310,384 - EX28DRAFT_0347 0.65 -0.3
310,409 + EX28DRAFT_0347 0.67 -0.7
310,409 + EX28DRAFT_0347 0.67 -1.2
310,410 - EX28DRAFT_0347 0.67 -0.2

Or see this region's nucleotide sequence