Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0340 and EX28DRAFT_0341 overlap by 4 nucleotides EX28DRAFT_0341 and EX28DRAFT_0342 overlap by 4 nucleotides EX28DRAFT_0342 and EX28DRAFT_0343 overlap by 1 nucleotides EX28DRAFT_0343 and EX28DRAFT_0344 overlap by 4 nucleotides
EX28DRAFT_0340: EX28DRAFT_0340 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase, at 302,000 to 303,670
_0340
EX28DRAFT_0341: EX28DRAFT_0341 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase, at 303,667 to 304,443
_0341
EX28DRAFT_0342: EX28DRAFT_0342 - 1,4-Dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36), at 304,440 to 305,297
_0342
EX28DRAFT_0343: EX28DRAFT_0343 - O-succinylbenzoate synthase (EC 4.2.1.113), at 305,297 to 306,262
_0343
EX28DRAFT_0344: EX28DRAFT_0344 - O-succinylbenzoate-CoA ligase, at 306,259 to 307,620
_0344
Position (kb) 304
305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 303.521 kb on + strand at 303.797 kb on - strand, within EX28DRAFT_0341 at 304.108 kb on + strand, within EX28DRAFT_0341 at 304.277 kb on - strand, within EX28DRAFT_0341 at 304.277 kb on - strand, within EX28DRAFT_0341 at 304.439 kb on + strand at 304.439 kb on + strand at 304.439 kb on + strand at 304.440 kb on - strand at 304.440 kb on - strand at 304.446 kb on + strand at 304.916 kb on - strand, within EX28DRAFT_0342 at 304.947 kb on + strand, within EX28DRAFT_0342 at 305.007 kb on + strand, within EX28DRAFT_0342 at 305.211 kb on + strand, within EX28DRAFT_0342 at 305.212 kb on - strand at 305.280 kb on + strand at 305.280 kb on + strand at 305.281 kb on - strand at 305.281 kb on - strand at 305.281 kb on - strand at 305.296 kb on - strand at 305.557 kb on + strand, within EX28DRAFT_0343 at 305.606 kb on - strand, within EX28DRAFT_0343 at 305.828 kb on + strand, within EX28DRAFT_0343 at 305.923 kb on - strand, within EX28DRAFT_0343 at 305.923 kb on - strand, within EX28DRAFT_0343
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 303,521 + -0.2 303,797 - EX28DRAFT_0341 0.17 -0.2 304,108 + EX28DRAFT_0341 0.57 +1.0 304,277 - EX28DRAFT_0341 0.79 -0.4 304,277 - EX28DRAFT_0341 0.79 +1.0 304,439 + -0.7 304,439 + -0.3 304,439 + +0.7 304,440 - -1.2 304,440 - -0.0 304,446 + +0.7 304,916 - EX28DRAFT_0342 0.55 -3.0 304,947 + EX28DRAFT_0342 0.59 -0.1 305,007 + EX28DRAFT_0342 0.66 +0.3 305,211 + EX28DRAFT_0342 0.90 -0.7 305,212 - -0.2 305,280 + -0.8 305,280 + +0.3 305,281 - +1.5 305,281 - -0.1 305,281 - -0.8 305,296 - -0.4 305,557 + EX28DRAFT_0343 0.27 +0.1 305,606 - EX28DRAFT_0343 0.32 -0.8 305,828 + EX28DRAFT_0343 0.55 -0.2 305,923 - EX28DRAFT_0343 0.65 -0.2 305,923 - EX28DRAFT_0343 0.65 +0.1
Or see this region's nucleotide sequence