Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0244

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0243 and EX28DRAFT_0244 are separated by 17 nucleotidesEX28DRAFT_0244 and EX28DRAFT_0245 overlap by 4 nucleotidesEX28DRAFT_0245 and EX28DRAFT_0246 overlap by 4 nucleotides EX28DRAFT_0243: EX28DRAFT_0243 - type VI secretion protein, EvpB/VC_A0108 family, at 197,072 to 198,610 _0243 EX28DRAFT_0244: EX28DRAFT_0244 - type VI secretion protein, VC_A0114 family, at 198,628 to 199,968 _0244 EX28DRAFT_0245: EX28DRAFT_0245 - type IV / VI secretion system protein, DotU family, at 199,965 to 200,654 _0245 EX28DRAFT_0246: EX28DRAFT_0246 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 200,651 to 202,357 _0246 Position (kb) 198 199 200Strain fitness (log2 ratio) -2 -1 0 1at 197.692 kb on + strand, within EX28DRAFT_0243at 197.692 kb on + strand, within EX28DRAFT_0243at 197.692 kb on + strand, within EX28DRAFT_0243at 197.693 kb on - strand, within EX28DRAFT_0243at 197.693 kb on - strand, within EX28DRAFT_0243at 197.767 kb on + strand, within EX28DRAFT_0243at 197.768 kb on - strand, within EX28DRAFT_0243at 197.768 kb on - strand, within EX28DRAFT_0243at 197.778 kb on - strand, within EX28DRAFT_0243at 197.778 kb on - strand, within EX28DRAFT_0243at 197.778 kb on - strand, within EX28DRAFT_0243at 197.796 kb on - strand, within EX28DRAFT_0243at 197.837 kb on + strand, within EX28DRAFT_0243at 197.915 kb on + strand, within EX28DRAFT_0243at 197.915 kb on + strand, within EX28DRAFT_0243at 197.915 kb on + strand, within EX28DRAFT_0243at 197.915 kb on + strand, within EX28DRAFT_0243at 197.916 kb on - strand, within EX28DRAFT_0243at 197.916 kb on - strand, within EX28DRAFT_0243at 197.916 kb on - strand, within EX28DRAFT_0243at 197.952 kb on - strand, within EX28DRAFT_0243at 197.952 kb on - strand, within EX28DRAFT_0243at 197.962 kb on + strand, within EX28DRAFT_0243at 197.962 kb on + strand, within EX28DRAFT_0243at 197.963 kb on - strand, within EX28DRAFT_0243at 197.998 kb on + strand, within EX28DRAFT_0243at 197.999 kb on - strand, within EX28DRAFT_0243at 198.070 kb on + strand, within EX28DRAFT_0243at 198.071 kb on - strand, within EX28DRAFT_0243at 198.080 kb on + strand, within EX28DRAFT_0243at 198.183 kb on - strand, within EX28DRAFT_0243at 198.245 kb on + strand, within EX28DRAFT_0243at 198.246 kb on - strand, within EX28DRAFT_0243at 198.246 kb on - strand, within EX28DRAFT_0243at 198.296 kb on + strand, within EX28DRAFT_0243at 198.484 kb on - strandat 198.530 kb on + strandat 198.701 kb on - strandat 198.852 kb on + strand, within EX28DRAFT_0244at 198.852 kb on + strand, within EX28DRAFT_0244at 198.853 kb on - strand, within EX28DRAFT_0244at 198.920 kb on + strand, within EX28DRAFT_0244at 198.921 kb on - strand, within EX28DRAFT_0244at 199.030 kb on + strand, within EX28DRAFT_0244at 199.152 kb on + strand, within EX28DRAFT_0244at 199.152 kb on + strand, within EX28DRAFT_0244at 199.153 kb on - strand, within EX28DRAFT_0244at 199.153 kb on - strand, within EX28DRAFT_0244at 199.164 kb on - strand, within EX28DRAFT_0244at 199.325 kb on + strand, within EX28DRAFT_0244at 199.326 kb on - strand, within EX28DRAFT_0244at 199.326 kb on - strand, within EX28DRAFT_0244at 199.485 kb on - strand, within EX28DRAFT_0244at 199.598 kb on - strand, within EX28DRAFT_0244at 199.663 kb on + strand, within EX28DRAFT_0244at 199.728 kb on + strand, within EX28DRAFT_0244at 199.729 kb on - strand, within EX28DRAFT_0244at 199.808 kb on + strand, within EX28DRAFT_0244at 199.809 kb on - strand, within EX28DRAFT_0244at 199.977 kb on - strandat 200.003 kb on + strandat 200.024 kb on + strandat 200.024 kb on + strandat 200.025 kb on - strandat 200.025 kb on - strandat 200.377 kb on + strand, within EX28DRAFT_0245at 200.555 kb on + strand, within EX28DRAFT_0245at 200.556 kb on - strand, within EX28DRAFT_0245at 200.646 kb on - strandat 200.647 kb on + strandat 200.648 kb on - strandat 200.793 kb on - strandat 200.793 kb on - strandat 200.858 kb on + strand, within EX28DRAFT_0246at 200.859 kb on - strand, within EX28DRAFT_0246at 200.859 kb on - strand, within EX28DRAFT_0246at 200.922 kb on + strand, within EX28DRAFT_0246at 200.922 kb on + strand, within EX28DRAFT_0246at 200.923 kb on - strand, within EX28DRAFT_0246

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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197,692 + EX28DRAFT_0243 0.40 +0.9
197,692 + EX28DRAFT_0243 0.40 +0.1
197,692 + EX28DRAFT_0243 0.40 -0.2
197,693 - EX28DRAFT_0243 0.40 -0.4
197,693 - EX28DRAFT_0243 0.40 +0.3
197,767 + EX28DRAFT_0243 0.45 -0.9
197,768 - EX28DRAFT_0243 0.45 +0.9
197,768 - EX28DRAFT_0243 0.45 +0.0
197,778 - EX28DRAFT_0243 0.46 +0.1
197,778 - EX28DRAFT_0243 0.46 +0.0
197,778 - EX28DRAFT_0243 0.46 -0.6
197,796 - EX28DRAFT_0243 0.47 -0.4
197,837 + EX28DRAFT_0243 0.50 -0.6
197,915 + EX28DRAFT_0243 0.55 -2.5
197,915 + EX28DRAFT_0243 0.55 -1.0
197,915 + EX28DRAFT_0243 0.55 +0.0
197,915 + EX28DRAFT_0243 0.55 +0.7
197,916 - EX28DRAFT_0243 0.55 -0.5
197,916 - EX28DRAFT_0243 0.55 +0.7
197,916 - EX28DRAFT_0243 0.55 +0.3
197,952 - EX28DRAFT_0243 0.57 -0.2
197,952 - EX28DRAFT_0243 0.57 -0.1
197,962 + EX28DRAFT_0243 0.58 -0.2
197,962 + EX28DRAFT_0243 0.58 +0.4
197,963 - EX28DRAFT_0243 0.58 -1.1
197,998 + EX28DRAFT_0243 0.60 +0.3
197,999 - EX28DRAFT_0243 0.60 +0.2
198,070 + EX28DRAFT_0243 0.65 -0.0
198,071 - EX28DRAFT_0243 0.65 -0.3
198,080 + EX28DRAFT_0243 0.65 +0.2
198,183 - EX28DRAFT_0243 0.72 +0.4
198,245 + EX28DRAFT_0243 0.76 +0.2
198,246 - EX28DRAFT_0243 0.76 +0.1
198,246 - EX28DRAFT_0243 0.76 +0.8
198,296 + EX28DRAFT_0243 0.80 -2.3
198,484 - +0.3
198,530 + +1.7
198,701 - +0.0
198,852 + EX28DRAFT_0244 0.17 -0.5
198,852 + EX28DRAFT_0244 0.17 -0.5
198,853 - EX28DRAFT_0244 0.17 -0.5
198,920 + EX28DRAFT_0244 0.22 +0.1
198,921 - EX28DRAFT_0244 0.22 -0.4
199,030 + EX28DRAFT_0244 0.30 -0.0
199,152 + EX28DRAFT_0244 0.39 +0.4
199,152 + EX28DRAFT_0244 0.39 -0.7
199,153 - EX28DRAFT_0244 0.39 -0.1
199,153 - EX28DRAFT_0244 0.39 +0.4
199,164 - EX28DRAFT_0244 0.40 +0.3
199,325 + EX28DRAFT_0244 0.52 +0.1
199,326 - EX28DRAFT_0244 0.52 -0.1
199,326 - EX28DRAFT_0244 0.52 -0.1
199,485 - EX28DRAFT_0244 0.64 -0.3
199,598 - EX28DRAFT_0244 0.72 +1.2
199,663 + EX28DRAFT_0244 0.77 -0.1
199,728 + EX28DRAFT_0244 0.82 +0.0
199,729 - EX28DRAFT_0244 0.82 +0.6
199,808 + EX28DRAFT_0244 0.88 +1.3
199,809 - EX28DRAFT_0244 0.88 +1.4
199,977 - -0.0
200,003 + -0.2
200,024 + +0.5
200,024 + -0.2
200,025 - +0.2
200,025 - -0.2
200,377 + EX28DRAFT_0245 0.60 +0.8
200,555 + EX28DRAFT_0245 0.86 +0.5
200,556 - EX28DRAFT_0245 0.86 +0.2
200,646 - +0.2
200,647 + +0.3
200,648 - -0.3
200,793 - -0.3
200,793 - -0.7
200,858 + EX28DRAFT_0246 0.12 -0.3
200,859 - EX28DRAFT_0246 0.12 +0.3
200,859 - EX28DRAFT_0246 0.12 -1.3
200,922 + EX28DRAFT_0246 0.16 +1.3
200,922 + EX28DRAFT_0246 0.16 -0.2
200,923 - EX28DRAFT_0246 0.16 +0.7

Or see this region's nucleotide sequence