Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0150

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0149 and EX28DRAFT_0150 are separated by 31 nucleotidesEX28DRAFT_0150 and EX28DRAFT_0151 are separated by 48 nucleotides EX28DRAFT_0149: EX28DRAFT_0149 - Predicted dehydrogenases and related proteins, at 94,846 to 95,832 _0149 EX28DRAFT_0150: EX28DRAFT_0150 - ABC-type sugar transport system, periplasmic component, at 95,864 to 96,793 _0150 EX28DRAFT_0151: EX28DRAFT_0151 - ABC-type sugar transport system, ATPase component, at 96,842 to 98,389 _0151 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1 2at 94.890 kb on - strandat 94.890 kb on - strandat 94.899 kb on + strandat 94.981 kb on + strand, within EX28DRAFT_0149at 94.982 kb on - strand, within EX28DRAFT_0149at 94.982 kb on - strand, within EX28DRAFT_0149at 95.126 kb on + strand, within EX28DRAFT_0149at 95.166 kb on - strand, within EX28DRAFT_0149at 95.177 kb on - strand, within EX28DRAFT_0149at 95.491 kb on + strand, within EX28DRAFT_0149at 95.491 kb on + strand, within EX28DRAFT_0149at 95.776 kb on + strandat 95.776 kb on + strandat 95.831 kb on - strandat 95.845 kb on + strandat 95.859 kb on + strandat 95.859 kb on + strandat 95.859 kb on + strandat 95.859 kb on + strandat 95.859 kb on + strandat 95.859 kb on + strandat 95.860 kb on - strandat 95.860 kb on - strandat 95.860 kb on - strandat 95.944 kb on + strandat 96.107 kb on - strand, within EX28DRAFT_0150at 96.239 kb on + strand, within EX28DRAFT_0150at 96.239 kb on + strand, within EX28DRAFT_0150at 96.239 kb on + strand, within EX28DRAFT_0150at 96.240 kb on - strand, within EX28DRAFT_0150at 96.385 kb on + strand, within EX28DRAFT_0150at 96.385 kb on + strand, within EX28DRAFT_0150at 96.389 kb on + strand, within EX28DRAFT_0150at 96.509 kb on - strand, within EX28DRAFT_0150at 96.791 kb on + strandat 96.791 kb on + strandat 96.791 kb on + strandat 96.791 kb on + strandat 96.791 kb on + strandat 96.791 kb on + strandat 96.791 kb on + strandat 96.791 kb on + strandat 96.791 kb on + strandat 96.792 kb on - strandat 96.792 kb on - strandat 96.792 kb on - strandat 96.792 kb on - strandat 96.792 kb on - strandat 96.792 kb on - strandat 96.792 kb on - strandat 96.792 kb on - strandat 96.792 kb on - strandat 96.794 kb on + strandat 96.794 kb on + strandat 97.100 kb on + strand, within EX28DRAFT_0151at 97.100 kb on + strand, within EX28DRAFT_0151at 97.101 kb on - strand, within EX28DRAFT_0151at 97.230 kb on - strand, within EX28DRAFT_0151at 97.408 kb on + strand, within EX28DRAFT_0151at 97.430 kb on - strand, within EX28DRAFT_0151at 97.434 kb on - strand, within EX28DRAFT_0151at 97.434 kb on - strand, within EX28DRAFT_0151at 97.725 kb on + strand, within EX28DRAFT_0151at 97.726 kb on - strand, within EX28DRAFT_0151at 97.726 kb on - strand, within EX28DRAFT_0151

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
94,890 - -0.2
94,890 - -0.0
94,899 + +0.3
94,981 + EX28DRAFT_0149 0.14 +0.7
94,982 - EX28DRAFT_0149 0.14 +0.0
94,982 - EX28DRAFT_0149 0.14 -0.4
95,126 + EX28DRAFT_0149 0.28 -0.5
95,166 - EX28DRAFT_0149 0.32 +0.7
95,177 - EX28DRAFT_0149 0.34 +0.1
95,491 + EX28DRAFT_0149 0.65 +0.3
95,491 + EX28DRAFT_0149 0.65 -1.3
95,776 + -1.1
95,776 + -0.2
95,831 - +1.0
95,845 + -0.0
95,859 + -1.0
95,859 + +0.1
95,859 + -0.3
95,859 + +0.0
95,859 + +0.5
95,859 + -0.3
95,860 - -0.1
95,860 - -0.2
95,860 - +0.3
95,944 + +0.6
96,107 - EX28DRAFT_0150 0.26 -1.4
96,239 + EX28DRAFT_0150 0.40 -0.3
96,239 + EX28DRAFT_0150 0.40 +0.4
96,239 + EX28DRAFT_0150 0.40 -0.2
96,240 - EX28DRAFT_0150 0.40 +0.4
96,385 + EX28DRAFT_0150 0.56 -0.4
96,385 + EX28DRAFT_0150 0.56 +0.2
96,389 + EX28DRAFT_0150 0.56 -1.0
96,509 - EX28DRAFT_0150 0.69 -0.4
96,791 + -0.3
96,791 + -0.4
96,791 + +0.1
96,791 + -0.2
96,791 + +1.0
96,791 + -1.1
96,791 + +0.2
96,791 + +0.4
96,791 + +0.6
96,792 - +0.1
96,792 - +0.3
96,792 - -0.1
96,792 - +0.2
96,792 - +2.7
96,792 - +1.0
96,792 - +0.7
96,792 - -1.0
96,792 - +0.2
96,794 + +0.8
96,794 + +0.3
97,100 + EX28DRAFT_0151 0.17 -0.3
97,100 + EX28DRAFT_0151 0.17 -0.6
97,101 - EX28DRAFT_0151 0.17 -0.0
97,230 - EX28DRAFT_0151 0.25 -0.1
97,408 + EX28DRAFT_0151 0.37 -0.4
97,430 - EX28DRAFT_0151 0.38 +0.1
97,434 - EX28DRAFT_0151 0.38 +0.1
97,434 - EX28DRAFT_0151 0.38 -1.5
97,725 + EX28DRAFT_0151 0.57 +0.3
97,726 - EX28DRAFT_0151 0.57 -1.9
97,726 - EX28DRAFT_0151 0.57 +0.1

Or see this region's nucleotide sequence