Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0122

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0121 and EX28DRAFT_0122 are separated by 12 nucleotidesEX28DRAFT_0122 and EX28DRAFT_0123 are separated by 286 nucleotides EX28DRAFT_0121: EX28DRAFT_0121 - Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases, at 58,363 to 59,730 _0121 EX28DRAFT_0122: EX28DRAFT_0122 - PTS system, glucose-like IIB component, at 59,743 to 61,287 _0122 EX28DRAFT_0123: EX28DRAFT_0123 - Large extracellular alpha-helical protein, at 61,574 to 66,526 _0123 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -1 0 1at 58.755 kb on + strand, within EX28DRAFT_0121at 58.811 kb on + strand, within EX28DRAFT_0121at 58.812 kb on - strand, within EX28DRAFT_0121at 58.812 kb on - strand, within EX28DRAFT_0121at 58.874 kb on + strand, within EX28DRAFT_0121at 58.875 kb on - strand, within EX28DRAFT_0121at 58.875 kb on - strand, within EX28DRAFT_0121at 58.875 kb on - strand, within EX28DRAFT_0121at 58.875 kb on - strand, within EX28DRAFT_0121at 58.875 kb on - strand, within EX28DRAFT_0121at 58.916 kb on + strand, within EX28DRAFT_0121at 58.943 kb on + strand, within EX28DRAFT_0121at 58.944 kb on - strand, within EX28DRAFT_0121at 59.067 kb on + strand, within EX28DRAFT_0121at 59.067 kb on + strand, within EX28DRAFT_0121at 59.067 kb on + strand, within EX28DRAFT_0121at 59.338 kb on - strand, within EX28DRAFT_0121at 59.372 kb on + strand, within EX28DRAFT_0121at 59.456 kb on + strand, within EX28DRAFT_0121at 59.457 kb on - strand, within EX28DRAFT_0121at 59.529 kb on + strand, within EX28DRAFT_0121at 59.681 kb on + strandat 59.682 kb on - strandat 59.682 kb on - strandat 59.682 kb on - strandat 59.734 kb on + strandat 59.792 kb on + strandat 59.811 kb on + strandat 59.811 kb on + strandat 59.811 kb on + strandat 59.812 kb on - strandat 59.812 kb on - strandat 59.823 kb on + strandat 59.824 kb on - strandat 59.993 kb on + strand, within EX28DRAFT_0122at 59.993 kb on + strand, within EX28DRAFT_0122at 60.092 kb on + strand, within EX28DRAFT_0122at 60.092 kb on + strand, within EX28DRAFT_0122at 60.125 kb on + strand, within EX28DRAFT_0122at 60.125 kb on + strand, within EX28DRAFT_0122at 60.125 kb on + strand, within EX28DRAFT_0122at 60.126 kb on - strand, within EX28DRAFT_0122at 60.126 kb on - strand, within EX28DRAFT_0122at 60.126 kb on - strand, within EX28DRAFT_0122at 60.126 kb on - strand, within EX28DRAFT_0122at 60.393 kb on + strand, within EX28DRAFT_0122at 60.393 kb on + strand, within EX28DRAFT_0122at 60.395 kb on + strand, within EX28DRAFT_0122at 60.395 kb on + strand, within EX28DRAFT_0122at 60.396 kb on - strand, within EX28DRAFT_0122at 60.396 kb on - strand, within EX28DRAFT_0122at 60.396 kb on - strand, within EX28DRAFT_0122at 60.396 kb on - strand, within EX28DRAFT_0122at 60.396 kb on - strand, within EX28DRAFT_0122at 60.528 kb on - strand, within EX28DRAFT_0122at 60.618 kb on + strand, within EX28DRAFT_0122at 60.619 kb on - strand, within EX28DRAFT_0122at 60.821 kb on + strand, within EX28DRAFT_0122at 60.830 kb on + strand, within EX28DRAFT_0122at 61.161 kb on - strandat 61.161 kb on - strandat 61.161 kb on - strandat 61.174 kb on - strandat 61.174 kb on - strandat 61.226 kb on + strandat 61.227 kb on + strandat 61.227 kb on + strandat 61.227 kb on + strandat 61.227 kb on + strandat 61.228 kb on - strandat 61.228 kb on - strandat 61.341 kb on - strandat 61.448 kb on - strandat 61.526 kb on + strandat 61.526 kb on + strandat 61.526 kb on + strandat 61.526 kb on + strandat 61.526 kb on + strandat 61.527 kb on - strandat 61.527 kb on - strandat 61.527 kb on - strandat 61.527 kb on - strandat 61.530 kb on + strandat 61.569 kb on - strandat 61.624 kb on + strandat 61.625 kb on - strandat 61.736 kb on - strandat 61.781 kb on - strandat 62.219 kb on - strand, within EX28DRAFT_0123at 62.273 kb on + strand, within EX28DRAFT_0123

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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58,755 + EX28DRAFT_0121 0.29 +0.0
58,811 + EX28DRAFT_0121 0.33 +0.9
58,812 - EX28DRAFT_0121 0.33 +0.6
58,812 - EX28DRAFT_0121 0.33 -0.1
58,874 + EX28DRAFT_0121 0.37 -0.6
58,875 - EX28DRAFT_0121 0.37 -0.0
58,875 - EX28DRAFT_0121 0.37 +0.3
58,875 - EX28DRAFT_0121 0.37 -0.9
58,875 - EX28DRAFT_0121 0.37 +1.1
58,875 - EX28DRAFT_0121 0.37 +0.2
58,916 + EX28DRAFT_0121 0.40 -0.3
58,943 + EX28DRAFT_0121 0.42 -0.2
58,944 - EX28DRAFT_0121 0.42 -0.3
59,067 + EX28DRAFT_0121 0.51 -0.3
59,067 + EX28DRAFT_0121 0.51 +0.2
59,067 + EX28DRAFT_0121 0.51 -0.7
59,338 - EX28DRAFT_0121 0.71 -0.5
59,372 + EX28DRAFT_0121 0.74 -0.3
59,456 + EX28DRAFT_0121 0.80 +0.4
59,457 - EX28DRAFT_0121 0.80 +0.4
59,529 + EX28DRAFT_0121 0.85 -0.9
59,681 + +0.2
59,682 - +0.1
59,682 - -0.9
59,682 - -0.0
59,734 + -1.3
59,792 + -0.1
59,811 + -0.3
59,811 + -1.1
59,811 + -1.5
59,812 - +1.0
59,812 - -0.7
59,823 + -0.2
59,824 - -0.4
59,993 + EX28DRAFT_0122 0.16 +0.2
59,993 + EX28DRAFT_0122 0.16 -0.4
60,092 + EX28DRAFT_0122 0.23 -0.0
60,092 + EX28DRAFT_0122 0.23 -0.0
60,125 + EX28DRAFT_0122 0.25 -0.3
60,125 + EX28DRAFT_0122 0.25 -0.1
60,125 + EX28DRAFT_0122 0.25 -0.3
60,126 - EX28DRAFT_0122 0.25 +0.3
60,126 - EX28DRAFT_0122 0.25 +0.1
60,126 - EX28DRAFT_0122 0.25 -0.9
60,126 - EX28DRAFT_0122 0.25 -1.2
60,393 + EX28DRAFT_0122 0.42 +0.1
60,393 + EX28DRAFT_0122 0.42 -0.7
60,395 + EX28DRAFT_0122 0.42 -0.3
60,395 + EX28DRAFT_0122 0.42 +0.1
60,396 - EX28DRAFT_0122 0.42 -0.4
60,396 - EX28DRAFT_0122 0.42 -0.1
60,396 - EX28DRAFT_0122 0.42 -0.2
60,396 - EX28DRAFT_0122 0.42 -1.1
60,396 - EX28DRAFT_0122 0.42 -0.3
60,528 - EX28DRAFT_0122 0.51 -0.2
60,618 + EX28DRAFT_0122 0.57 -0.9
60,619 - EX28DRAFT_0122 0.57 -0.0
60,821 + EX28DRAFT_0122 0.70 -0.6
60,830 + EX28DRAFT_0122 0.70 -0.1
61,161 - +0.9
61,161 - -0.4
61,161 - +0.1
61,174 - -1.4
61,174 - +0.4
61,226 + +1.5
61,227 + +1.3
61,227 + +0.8
61,227 + +0.1
61,227 + -0.3
61,228 - -0.0
61,228 - +0.3
61,341 - +0.4
61,448 - -0.1
61,526 + +0.0
61,526 + +0.2
61,526 + -0.5
61,526 + +0.1
61,526 + +0.1
61,527 - +1.0
61,527 - +0.4
61,527 - +0.8
61,527 - +0.4
61,530 + -0.0
61,569 - +0.6
61,624 + +0.0
61,625 - -0.1
61,736 - +0.2
61,781 - +0.4
62,219 - EX28DRAFT_0123 0.13 -0.4
62,273 + EX28DRAFT_0123 0.14 -0.2

Or see this region's nucleotide sequence