Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0074 and EX28DRAFT_0075 overlap by 4 nucleotides EX28DRAFT_0075 and EX28DRAFT_0076 are separated by 185 nucleotides EX28DRAFT_0076 and EX28DRAFT_0077 are separated by 15 nucleotides
EX28DRAFT_0074: EX28DRAFT_0074 - sigma E regulatory protein, MucB/RseB, at 15,829 to 16,782
_0074
EX28DRAFT_0075: EX28DRAFT_0075 - positive regulator of sigma(E), RseC/MucC, at 16,779 to 17,255
_0075
EX28DRAFT_0076: EX28DRAFT_0076 - elongation factor 4, at 17,441 to 19,240
_0076
EX28DRAFT_0077: EX28DRAFT_0077 - signal peptidase I, bacterial type, at 19,256 to 20,230
_0077
Position (kb)
17
18
19
20 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 16.482 kb on + strand, within EX28DRAFT_0074 at 16.585 kb on + strand, within EX28DRAFT_0074 at 16.618 kb on - strand, within EX28DRAFT_0074 at 16.680 kb on + strand, within EX28DRAFT_0074 at 16.681 kb on - strand, within EX28DRAFT_0074 at 16.761 kb on + strand at 16.761 kb on + strand at 16.857 kb on - strand, within EX28DRAFT_0075 at 16.857 kb on - strand, within EX28DRAFT_0075 at 16.860 kb on - strand, within EX28DRAFT_0075 at 16.902 kb on - strand, within EX28DRAFT_0075 at 17.022 kb on + strand, within EX28DRAFT_0075 at 17.048 kb on + strand, within EX28DRAFT_0075 at 17.048 kb on + strand, within EX28DRAFT_0075 at 17.096 kb on + strand, within EX28DRAFT_0075 at 17.315 kb on + strand at 17.316 kb on - strand at 17.325 kb on + strand at 17.326 kb on - strand at 17.326 kb on - strand at 17.326 kb on - strand at 17.326 kb on - strand at 17.352 kb on + strand at 17.352 kb on + strand at 17.352 kb on + strand at 17.357 kb on + strand at 17.430 kb on + strand at 17.509 kb on + strand at 17.627 kb on + strand, within EX28DRAFT_0076 at 18.094 kb on + strand, within EX28DRAFT_0076 at 18.554 kb on + strand, within EX28DRAFT_0076 at 18.767 kb on + strand, within EX28DRAFT_0076 at 19.048 kb on + strand, within EX28DRAFT_0076 at 20.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 16,482 + EX28DRAFT_0074 0.68 -1.2 16,585 + EX28DRAFT_0074 0.79 -0.9 16,618 - EX28DRAFT_0074 0.83 -1.6 16,680 + EX28DRAFT_0074 0.89 -2.0 16,681 - EX28DRAFT_0074 0.89 -0.4 16,761 + -0.5 16,761 + -1.9 16,857 - EX28DRAFT_0075 0.16 -0.6 16,857 - EX28DRAFT_0075 0.16 -1.8 16,860 - EX28DRAFT_0075 0.17 -0.1 16,902 - EX28DRAFT_0075 0.26 -0.9 17,022 + EX28DRAFT_0075 0.51 -1.2 17,048 + EX28DRAFT_0075 0.56 -0.3 17,048 + EX28DRAFT_0075 0.56 -1.8 17,096 + EX28DRAFT_0075 0.66 +0.1 17,315 + -0.3 17,316 - -0.4 17,325 + -0.4 17,326 - -0.5 17,326 - +0.0 17,326 - -1.5 17,326 - -0.2 17,352 + +0.2 17,352 + -0.4 17,352 + +0.4 17,357 + +0.2 17,430 + -0.6 17,509 + -0.3 17,627 + EX28DRAFT_0076 0.10 -0.7 18,094 + EX28DRAFT_0076 0.36 -1.3 18,554 + EX28DRAFT_0076 0.62 -2.9 18,767 + EX28DRAFT_0076 0.74 -1.8 19,048 + EX28DRAFT_0076 0.89 -0.8 20,228 + +0.2
Or see this region's nucleotide sequence