Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09970 and CA264_09975 are separated by 12 nucleotides CA264_09975 and CA264_09980 are separated by 19 nucleotides CA264_09980 and CA264_09985 are separated by 46 nucleotides
CA264_09970: CA264_09970 - conjugal transfer protein TraG, at 2,320,400 to 2,322,910
_09970
CA264_09975: CA264_09975 - hypothetical protein, at 2,322,923 to 2,323,270
_09975
CA264_09980: CA264_09980 - carbamoyl phosphate synthetase, at 2,323,290 to 2,323,598
_09980
CA264_09985: CA264_09985 - hypothetical protein, at 2,323,645 to 2,324,124
_09985
Position (kb)
2322
2323
2324 Strain fitness (log2 ratio)
-2
-1
0
1 at 2321.936 kb on + strand, within CA264_09970 at 2321.944 kb on + strand, within CA264_09970 at 2322.207 kb on + strand, within CA264_09970 at 2322.550 kb on + strand, within CA264_09970 at 2322.551 kb on - strand, within CA264_09970 at 2322.551 kb on - strand, within CA264_09970 at 2322.589 kb on + strand, within CA264_09970 at 2322.591 kb on + strand, within CA264_09970 at 2322.591 kb on + strand, within CA264_09970 at 2322.592 kb on - strand, within CA264_09970 at 2322.684 kb on + strand at 2322.896 kb on + strand at 2322.925 kb on - strand at 2322.927 kb on + strand at 2322.927 kb on + strand at 2322.928 kb on - strand at 2323.052 kb on - strand, within CA264_09975 at 2323.195 kb on + strand, within CA264_09975 at 2323.196 kb on - strand, within CA264_09975 at 2323.198 kb on - strand, within CA264_09975 at 2323.252 kb on + strand at 2323.252 kb on + strand at 2323.253 kb on - strand at 2323.311 kb on - strand at 2323.332 kb on + strand, within CA264_09980 at 2323.333 kb on - strand, within CA264_09980 at 2323.451 kb on - strand, within CA264_09980 at 2323.503 kb on + strand, within CA264_09980 at 2323.503 kb on + strand, within CA264_09980 at 2323.653 kb on + strand at 2323.747 kb on + strand, within CA264_09985 at 2323.781 kb on + strand, within CA264_09985 at 2324.057 kb on - strand, within CA264_09985 at 2324.198 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 2,321,936 + CA264_09970 0.61 +0.4 2,321,944 + CA264_09970 0.61 -0.9 2,322,207 + CA264_09970 0.72 -0.0 2,322,550 + CA264_09970 0.86 -0.6 2,322,551 - CA264_09970 0.86 +0.3 2,322,551 - CA264_09970 0.86 -0.7 2,322,589 + CA264_09970 0.87 -0.1 2,322,591 + CA264_09970 0.87 +1.2 2,322,591 + CA264_09970 0.87 +1.2 2,322,592 - CA264_09970 0.87 -0.5 2,322,684 + -0.1 2,322,896 + +0.1 2,322,925 - -0.7 2,322,927 + -0.0 2,322,927 + -0.6 2,322,928 - -1.3 2,323,052 - CA264_09975 0.37 -0.5 2,323,195 + CA264_09975 0.78 -0.1 2,323,196 - CA264_09975 0.78 +0.2 2,323,198 - CA264_09975 0.79 -0.3 2,323,252 + +0.7 2,323,252 + +0.8 2,323,253 - +0.4 2,323,311 - +0.2 2,323,332 + CA264_09980 0.14 -0.6 2,323,333 - CA264_09980 0.14 -0.3 2,323,451 - CA264_09980 0.52 -1.8 2,323,503 + CA264_09980 0.69 -0.7 2,323,503 + CA264_09980 0.69 -0.0 2,323,653 + -0.8 2,323,747 + CA264_09985 0.21 -0.1 2,323,781 + CA264_09985 0.28 -1.7 2,324,057 - CA264_09985 0.86 -1.0 2,324,198 + -1.7
Or see this region's nucleotide sequence