Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04095 and CA264_04100 are separated by 140 nucleotides CA264_04100 and CA264_04105 are separated by 313 nucleotides CA264_04105 and CA264_04110 are separated by 301 nucleotides
CA264_04095: CA264_04095 - GAF domain-containing protein, at 949,954 to 950,445
_04095
CA264_04100: CA264_04100 - twin-arginine translocase TatA/TatE family subunit, at 950,586 to 950,798
_04100
CA264_04105: CA264_04105 - hypothetical protein, at 951,112 to 951,660
_04105
CA264_04110: CA264_04110 - hypothetical protein, at 951,962 to 953,728
_04110
Position (kb) 951
952 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 950.183 kb on + strand, within CA264_04095 at 950.183 kb on + strand, within CA264_04095 at 950.351 kb on - strand, within CA264_04095 at 950.390 kb on + strand, within CA264_04095 at 950.391 kb on - strand, within CA264_04095 at 950.537 kb on + strand at 950.565 kb on + strand at 950.588 kb on - strand at 950.638 kb on - strand, within CA264_04100 at 950.680 kb on - strand, within CA264_04100 at 950.733 kb on + strand, within CA264_04100 at 950.733 kb on + strand, within CA264_04100 at 950.738 kb on + strand, within CA264_04100 at 950.781 kb on + strand at 950.782 kb on - strand at 950.809 kb on - strand at 950.842 kb on + strand at 950.846 kb on - strand at 950.846 kb on - strand at 950.847 kb on + strand at 950.881 kb on + strand at 950.997 kb on + strand at 950.998 kb on - strand at 951.057 kb on + strand at 951.061 kb on + strand at 951.062 kb on - strand at 951.062 kb on - strand at 951.113 kb on + strand at 951.189 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.311 kb on - strand, within CA264_04105 at 951.311 kb on - strand, within CA264_04105 at 951.405 kb on - strand, within CA264_04105 at 951.447 kb on + strand, within CA264_04105 at 951.479 kb on + strand, within CA264_04105 at 951.533 kb on - strand, within CA264_04105 at 951.540 kb on + strand, within CA264_04105 at 951.540 kb on + strand, within CA264_04105 at 951.541 kb on - strand, within CA264_04105 at 951.541 kb on - strand, within CA264_04105 at 951.570 kb on - strand, within CA264_04105 at 951.619 kb on - strand at 951.619 kb on - strand at 951.630 kb on - strand at 951.660 kb on + strand at 951.660 kb on + strand at 951.675 kb on + strand at 951.746 kb on - strand at 951.769 kb on + strand at 951.774 kb on - strand at 951.775 kb on + strand at 951.789 kb on + strand at 951.790 kb on - strand at 951.809 kb on - strand at 951.826 kb on - strand at 951.826 kb on - strand at 951.850 kb on - strand at 951.923 kb on - strand at 951.934 kb on + strand at 951.956 kb on - strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.960 kb on - strand at 951.960 kb on - strand at 951.960 kb on - strand at 951.997 kb on + strand at 952.030 kb on + strand at 952.030 kb on + strand at 952.031 kb on - strand at 952.106 kb on + strand at 952.107 kb on - strand at 952.110 kb on + strand at 952.110 kb on + strand at 952.127 kb on + strand at 952.127 kb on + strand at 952.149 kb on - strand, within CA264_04110 at 952.149 kb on - strand, within CA264_04110 at 952.220 kb on + strand, within CA264_04110 at 952.220 kb on + strand, within CA264_04110 at 952.221 kb on - strand, within CA264_04110 at 952.360 kb on + strand, within CA264_04110 at 952.459 kb on + strand, within CA264_04110 at 952.460 kb on - strand, within CA264_04110 at 952.591 kb on + strand, within CA264_04110
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 950,183 + CA264_04095 0.47 -1.6 950,183 + CA264_04095 0.47 -0.3 950,351 - CA264_04095 0.81 -1.1 950,390 + CA264_04095 0.89 +0.0 950,391 - CA264_04095 0.89 -0.9 950,537 + +1.2 950,565 + -1.5 950,588 - -0.5 950,638 - CA264_04100 0.24 +0.2 950,680 - CA264_04100 0.44 -0.4 950,733 + CA264_04100 0.69 +0.2 950,733 + CA264_04100 0.69 -0.3 950,738 + CA264_04100 0.71 -0.0 950,781 + -2.0 950,782 - -0.0 950,809 - -0.8 950,842 + +0.2 950,846 - -0.2 950,846 - -0.1 950,847 + -0.2 950,881 + -0.0 950,997 + +0.3 950,998 - +0.4 951,057 + -0.1 951,061 + +0.4 951,062 - -0.2 951,062 - +0.5 951,113 + -0.8 951,189 - CA264_04105 0.14 +0.1 951,226 - CA264_04105 0.21 -0.9 951,226 - CA264_04105 0.21 +0.9 951,226 - CA264_04105 0.21 -0.5 951,226 - CA264_04105 0.21 -0.4 951,311 - CA264_04105 0.36 +1.1 951,311 - CA264_04105 0.36 -0.5 951,405 - CA264_04105 0.53 -1.2 951,447 + CA264_04105 0.61 -0.4 951,479 + CA264_04105 0.67 -0.2 951,533 - CA264_04105 0.77 -0.1 951,540 + CA264_04105 0.78 +0.6 951,540 + CA264_04105 0.78 -0.6 951,541 - CA264_04105 0.78 -1.1 951,541 - CA264_04105 0.78 -0.1 951,570 - CA264_04105 0.83 -2.6 951,619 - +0.5 951,619 - -0.8 951,630 - +1.0 951,660 + +0.2 951,660 + -0.4 951,675 + +0.4 951,746 - +0.3 951,769 + -0.9 951,774 - +1.4 951,775 + +0.4 951,789 + -0.9 951,790 - -0.5 951,809 - -0.3 951,826 - -0.7 951,826 - -0.0 951,850 - -0.4 951,923 - +0.6 951,934 + +0.1 951,956 - -0.1 951,959 + -0.2 951,959 + -1.1 951,959 + +0.7 951,959 + -0.1 951,959 + -0.3 951,959 + -0.6 951,960 - +1.0 951,960 - -0.3 951,960 - -1.1 951,997 + +3.2 952,030 + -0.4 952,030 + -0.6 952,031 - -0.5 952,106 + -0.9 952,107 - -0.1 952,110 + +0.1 952,110 + -0.2 952,127 + +0.2 952,127 + -0.7 952,149 - CA264_04110 0.11 -0.4 952,149 - CA264_04110 0.11 +0.3 952,220 + CA264_04110 0.15 +0.3 952,220 + CA264_04110 0.15 -1.0 952,221 - CA264_04110 0.15 -0.3 952,360 + CA264_04110 0.23 -0.5 952,459 + CA264_04110 0.28 +0.2 952,460 - CA264_04110 0.28 +0.1 952,591 + CA264_04110 0.36 +0.5
Or see this region's nucleotide sequence