Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03095

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03090 and CA264_03095 are separated by 644 nucleotidesCA264_03095 and CA264_03100 are separated by 76 nucleotides CA264_03090: CA264_03090 - hypothetical protein, at 721,402 to 721,617 _03090 CA264_03095: CA264_03095 - hypothetical protein, at 722,262 to 722,699 _03095 CA264_03100: CA264_03100 - Xaa-Pro aminopeptidase, at 722,776 to 724,551 _03100 Position (kb) 722 723Strain fitness (log2 ratio) -2 -1 0 1 2at 721.389 kb on + strandat 721.447 kb on - strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.486 kb on + strand, within CA264_03090at 721.502 kb on + strand, within CA264_03090at 721.502 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.507 kb on - strand, within CA264_03090at 721.507 kb on - strand, within CA264_03090at 721.509 kb on + strand, within CA264_03090at 721.519 kb on + strand, within CA264_03090at 721.519 kb on + strand, within CA264_03090at 721.524 kb on + strand, within CA264_03090at 721.605 kb on + strandat 721.606 kb on - strandat 721.606 kb on - strandat 721.610 kb on + strandat 721.630 kb on + strandat 721.634 kb on + strandat 721.636 kb on + strandat 721.637 kb on - strandat 721.641 kb on - strandat 721.663 kb on - strandat 721.669 kb on + strandat 721.670 kb on - strandat 721.759 kb on + strandat 721.760 kb on - strandat 721.802 kb on + strandat 721.817 kb on + strandat 721.822 kb on + strandat 721.822 kb on + strandat 721.822 kb on + strandat 721.823 kb on - strandat 721.825 kb on + strandat 721.825 kb on + strandat 721.831 kb on + strandat 721.922 kb on + strandat 721.922 kb on + strandat 721.923 kb on - strandat 721.923 kb on - strandat 722.041 kb on - strandat 722.045 kb on + strandat 722.045 kb on + strandat 722.046 kb on - strandat 722.118 kb on + strandat 722.119 kb on - strandat 722.128 kb on + strandat 722.128 kb on + strandat 722.134 kb on + strandat 722.211 kb on + strandat 722.211 kb on + strandat 722.211 kb on + strandat 722.212 kb on - strandat 722.212 kb on - strandat 722.212 kb on - strandat 722.350 kb on + strand, within CA264_03095at 722.350 kb on + strand, within CA264_03095at 722.350 kb on + strand, within CA264_03095at 722.351 kb on - strand, within CA264_03095at 722.483 kb on + strand, within CA264_03095at 722.509 kb on + strand, within CA264_03095at 722.510 kb on - strand, within CA264_03095at 722.583 kb on + strand, within CA264_03095at 722.583 kb on + strand, within CA264_03095at 722.592 kb on + strand, within CA264_03095at 722.593 kb on - strand, within CA264_03095at 722.603 kb on - strand, within CA264_03095at 722.625 kb on + strand, within CA264_03095at 722.625 kb on + strand, within CA264_03095at 722.625 kb on + strand, within CA264_03095at 722.626 kb on - strand, within CA264_03095at 722.628 kb on - strand, within CA264_03095at 722.641 kb on + strand, within CA264_03095at 722.641 kb on + strand, within CA264_03095at 722.642 kb on - strand, within CA264_03095at 722.745 kb on + strandat 722.773 kb on + strandat 722.773 kb on + strandat 722.875 kb on + strandat 722.875 kb on + strandat 722.876 kb on - strandat 722.876 kb on - strandat 722.890 kb on + strandat 722.966 kb on + strand, within CA264_03100at 722.966 kb on + strand, within CA264_03100at 723.269 kb on + strand, within CA264_03100at 723.270 kb on - strand, within CA264_03100at 723.378 kb on + strand, within CA264_03100at 723.516 kb on - strand, within CA264_03100at 723.535 kb on - strand, within CA264_03100at 723.601 kb on + strand, within CA264_03100at 723.602 kb on - strand, within CA264_03100at 723.611 kb on - strand, within CA264_03100

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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721,389 + -0.1
721,447 - CA264_03090 0.21 -0.7
721,467 + CA264_03090 0.30 -0.4
721,467 + CA264_03090 0.30 +0.5
721,467 + CA264_03090 0.30 -0.6
721,467 + CA264_03090 0.30 +0.2
721,467 + CA264_03090 0.30 -0.0
721,486 + CA264_03090 0.39 +0.4
721,502 + CA264_03090 0.46 -2.1
721,502 + CA264_03090 0.46 -1.0
721,506 + CA264_03090 0.48 -0.7
721,506 + CA264_03090 0.48 +0.7
721,506 + CA264_03090 0.48 +0.3
721,506 + CA264_03090 0.48 -0.5
721,507 - CA264_03090 0.49 +0.0
721,507 - CA264_03090 0.49 -0.4
721,509 + CA264_03090 0.50 +0.2
721,519 + CA264_03090 0.54 +0.2
721,519 + CA264_03090 0.54 -0.8
721,524 + CA264_03090 0.56 -0.6
721,605 + +1.1
721,606 - +0.9
721,606 - +0.0
721,610 + -0.2
721,630 + +0.1
721,634 + +1.1
721,636 + -1.0
721,637 - -1.6
721,641 - -0.0
721,663 - -0.4
721,669 + +0.3
721,670 - +1.1
721,759 + -1.1
721,760 - -0.8
721,802 + -0.0
721,817 + +0.2
721,822 + -0.3
721,822 + -1.2
721,822 + -0.3
721,823 - -0.8
721,825 + +0.6
721,825 + -0.1
721,831 + -1.2
721,922 + -1.3
721,922 + +0.5
721,923 - -0.7
721,923 - +0.9
722,041 - -0.5
722,045 + +0.3
722,045 + -0.0
722,046 - +0.1
722,118 + -0.6
722,119 - +0.3
722,128 + +0.1
722,128 + +0.0
722,134 + +1.3
722,211 + +0.0
722,211 + -0.0
722,211 + -0.1
722,212 - -0.0
722,212 - -0.0
722,212 - -0.3
722,350 + CA264_03095 0.20 +2.3
722,350 + CA264_03095 0.20 -0.3
722,350 + CA264_03095 0.20 +0.1
722,351 - CA264_03095 0.20 -0.2
722,483 + CA264_03095 0.50 +0.4
722,509 + CA264_03095 0.56 +0.2
722,510 - CA264_03095 0.57 +0.2
722,583 + CA264_03095 0.73 -0.1
722,583 + CA264_03095 0.73 +0.1
722,592 + CA264_03095 0.75 -0.1
722,593 - CA264_03095 0.76 +0.4
722,603 - CA264_03095 0.78 +1.1
722,625 + CA264_03095 0.83 -0.1
722,625 + CA264_03095 0.83 +0.5
722,625 + CA264_03095 0.83 +0.2
722,626 - CA264_03095 0.83 +0.1
722,628 - CA264_03095 0.84 +0.6
722,641 + CA264_03095 0.87 -0.1
722,641 + CA264_03095 0.87 -0.1
722,642 - CA264_03095 0.87 +0.0
722,745 + -0.5
722,773 + -0.2
722,773 + -0.3
722,875 + -0.4
722,875 + +0.3
722,876 - -0.3
722,876 - -0.9
722,890 + -0.1
722,966 + CA264_03100 0.11 -0.4
722,966 + CA264_03100 0.11 -0.9
723,269 + CA264_03100 0.28 -0.5
723,270 - CA264_03100 0.28 +0.9
723,378 + CA264_03100 0.34 -0.5
723,516 - CA264_03100 0.42 -1.2
723,535 - CA264_03100 0.43 -0.8
723,601 + CA264_03100 0.46 -0.7
723,602 - CA264_03100 0.47 -0.4
723,611 - CA264_03100 0.47 +0.3

Or see this region's nucleotide sequence