Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00985

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_00980 and CA264_00985 are separated by 91 nucleotidesCA264_00985 and CA264_00990 are separated by 99 nucleotides CA264_00980: CA264_00980 - polysaccharide biosynthesis protein, at 212,705 to 214,258 _00980 CA264_00985: CA264_00985 - hypothetical protein, at 214,350 to 215,471 _00985 CA264_00990: CA264_00990 - hypothetical protein, at 215,571 to 217,043 _00990 Position (kb) 214 215 216Strain fitness (log2 ratio) -1 0 1 2at 213.354 kb on + strand, within CA264_00980at 213.355 kb on - strand, within CA264_00980at 213.443 kb on + strand, within CA264_00980at 213.444 kb on - strand, within CA264_00980at 213.444 kb on - strand, within CA264_00980at 213.524 kb on + strand, within CA264_00980at 213.525 kb on - strand, within CA264_00980at 213.553 kb on + strand, within CA264_00980at 213.556 kb on - strand, within CA264_00980at 213.568 kb on - strand, within CA264_00980at 213.632 kb on - strand, within CA264_00980at 213.632 kb on - strand, within CA264_00980at 213.632 kb on - strand, within CA264_00980at 213.654 kb on + strand, within CA264_00980at 213.654 kb on + strand, within CA264_00980at 213.655 kb on - strand, within CA264_00980at 213.690 kb on + strand, within CA264_00980at 213.744 kb on + strand, within CA264_00980at 213.744 kb on + strand, within CA264_00980at 213.745 kb on - strand, within CA264_00980at 213.745 kb on - strand, within CA264_00980at 213.745 kb on - strand, within CA264_00980at 213.781 kb on - strand, within CA264_00980at 213.785 kb on + strand, within CA264_00980at 213.785 kb on + strand, within CA264_00980at 213.786 kb on - strand, within CA264_00980at 213.786 kb on - strand, within CA264_00980at 213.786 kb on - strand, within CA264_00980at 213.786 kb on - strand, within CA264_00980at 213.889 kb on - strand, within CA264_00980at 213.905 kb on + strand, within CA264_00980at 213.926 kb on + strand, within CA264_00980at 213.926 kb on + strand, within CA264_00980at 213.927 kb on - strand, within CA264_00980at 213.927 kb on - strand, within CA264_00980at 213.927 kb on - strand, within CA264_00980at 213.927 kb on - strand, within CA264_00980at 213.933 kb on + strand, within CA264_00980at 213.933 kb on + strand, within CA264_00980at 213.934 kb on - strand, within CA264_00980at 213.958 kb on - strand, within CA264_00980at 214.089 kb on - strand, within CA264_00980at 214.122 kb on - strandat 214.155 kb on + strandat 214.156 kb on - strandat 214.256 kb on + strandat 214.257 kb on - strandat 214.388 kb on + strandat 214.406 kb on + strandat 214.406 kb on + strandat 214.407 kb on - strandat 214.407 kb on - strandat 214.462 kb on + strandat 214.462 kb on + strandat 214.463 kb on - strand, within CA264_00985at 214.463 kb on - strand, within CA264_00985at 214.470 kb on - strand, within CA264_00985at 214.478 kb on + strand, within CA264_00985at 214.479 kb on - strand, within CA264_00985at 214.563 kb on + strand, within CA264_00985at 214.563 kb on + strand, within CA264_00985at 214.563 kb on + strand, within CA264_00985at 214.600 kb on + strand, within CA264_00985at 214.600 kb on + strand, within CA264_00985at 214.636 kb on - strand, within CA264_00985at 214.644 kb on + strand, within CA264_00985at 214.666 kb on - strand, within CA264_00985at 214.701 kb on + strand, within CA264_00985at 214.702 kb on - strand, within CA264_00985at 214.702 kb on - strand, within CA264_00985at 214.734 kb on - strand, within CA264_00985at 214.734 kb on - strand, within CA264_00985at 214.741 kb on - strand, within CA264_00985at 214.743 kb on + strand, within CA264_00985at 214.743 kb on + strand, within CA264_00985at 214.744 kb on - strand, within CA264_00985at 214.925 kb on + strand, within CA264_00985at 214.938 kb on - strand, within CA264_00985at 214.938 kb on - strand, within CA264_00985at 214.938 kb on - strand, within CA264_00985at 214.942 kb on - strand, within CA264_00985at 214.943 kb on - strand, within CA264_00985at 214.947 kb on + strand, within CA264_00985at 215.005 kb on - strand, within CA264_00985at 215.005 kb on - strand, within CA264_00985at 215.047 kb on + strand, within CA264_00985at 215.048 kb on - strand, within CA264_00985at 215.052 kb on + strand, within CA264_00985at 215.052 kb on + strand, within CA264_00985at 215.065 kb on + strand, within CA264_00985at 215.127 kb on + strand, within CA264_00985at 215.128 kb on - strand, within CA264_00985at 215.200 kb on - strand, within CA264_00985at 215.289 kb on + strand, within CA264_00985at 215.289 kb on + strand, within CA264_00985at 215.289 kb on + strand, within CA264_00985at 215.290 kb on - strand, within CA264_00985at 215.290 kb on - strand, within CA264_00985at 215.375 kb on - strandat 215.394 kb on + strandat 215.394 kb on + strandat 215.421 kb on - strandat 215.468 kb on - strandat 215.470 kb on - strandat 215.537 kb on - strandat 215.554 kb on + strandat 215.558 kb on + strandat 215.559 kb on - strandat 215.559 kb on - strandat 215.559 kb on - strandat 215.564 kb on + strandat 215.565 kb on - strandat 215.565 kb on - strandat 215.570 kb on + strandat 215.576 kb on + strandat 215.577 kb on - strandat 215.577 kb on - strandat 215.582 kb on + strandat 215.583 kb on + strandat 215.583 kb on - strandat 215.583 kb on - strandat 215.585 kb on + strandat 215.585 kb on + strandat 215.586 kb on - strandat 215.594 kb on - strandat 215.673 kb on - strandat 215.710 kb on + strandat 215.713 kb on + strandat 215.746 kb on + strand, within CA264_00990at 215.857 kb on + strand, within CA264_00990at 215.905 kb on - strand, within CA264_00990at 215.905 kb on - strand, within CA264_00990at 215.923 kb on + strand, within CA264_00990at 215.979 kb on - strand, within CA264_00990at 215.979 kb on - strand, within CA264_00990at 215.979 kb on - strand, within CA264_00990at 215.980 kb on + strand, within CA264_00990at 216.105 kb on + strand, within CA264_00990at 216.186 kb on - strand, within CA264_00990at 216.222 kb on - strand, within CA264_00990at 216.273 kb on + strand, within CA264_00990at 216.273 kb on + strand, within CA264_00990at 216.273 kb on + strand, within CA264_00990at 216.274 kb on - strand, within CA264_00990at 216.277 kb on - strand, within CA264_00990at 216.333 kb on + strand, within CA264_00990at 216.336 kb on + strand, within CA264_00990at 216.337 kb on - strand, within CA264_00990at 216.337 kb on - strand, within CA264_00990at 216.337 kb on - strand, within CA264_00990

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
213,354 + CA264_00980 0.42 -0.6
213,355 - CA264_00980 0.42 +0.5
213,443 + CA264_00980 0.47 -0.0
213,444 - CA264_00980 0.48 -0.5
213,444 - CA264_00980 0.48 -0.1
213,524 + CA264_00980 0.53 -0.7
213,525 - CA264_00980 0.53 -0.8
213,553 + CA264_00980 0.55 +0.0
213,556 - CA264_00980 0.55 -0.5
213,568 - CA264_00980 0.56 +0.8
213,632 - CA264_00980 0.60 -0.7
213,632 - CA264_00980 0.60 +1.2
213,632 - CA264_00980 0.60 +0.8
213,654 + CA264_00980 0.61 +0.4
213,654 + CA264_00980 0.61 +0.2
213,655 - CA264_00980 0.61 -0.0
213,690 + CA264_00980 0.63 -0.7
213,744 + CA264_00980 0.67 +0.3
213,744 + CA264_00980 0.67 +0.1
213,745 - CA264_00980 0.67 +1.6
213,745 - CA264_00980 0.67 +1.2
213,745 - CA264_00980 0.67 -0.6
213,781 - CA264_00980 0.69 +0.2
213,785 + CA264_00980 0.69 +0.5
213,785 + CA264_00980 0.69 +0.6
213,786 - CA264_00980 0.70 +0.2
213,786 - CA264_00980 0.70 +0.1
213,786 - CA264_00980 0.70 -0.3
213,786 - CA264_00980 0.70 -0.3
213,889 - CA264_00980 0.76 -0.0
213,905 + CA264_00980 0.77 +0.6
213,926 + CA264_00980 0.79 -0.1
213,926 + CA264_00980 0.79 +0.9
213,927 - CA264_00980 0.79 +0.6
213,927 - CA264_00980 0.79 -0.4
213,927 - CA264_00980 0.79 -1.2
213,927 - CA264_00980 0.79 +0.3
213,933 + CA264_00980 0.79 +0.3
213,933 + CA264_00980 0.79 +0.2
213,934 - CA264_00980 0.79 -0.2
213,958 - CA264_00980 0.81 +0.9
214,089 - CA264_00980 0.89 -0.1
214,122 - +0.1
214,155 + -0.2
214,156 - -0.2
214,256 + -0.5
214,257 - -0.2
214,388 + -1.2
214,406 + -1.1
214,406 + -0.5
214,407 - -0.5
214,407 - +0.5
214,462 + -0.6
214,462 + -0.6
214,463 - CA264_00985 0.10 -1.1
214,463 - CA264_00985 0.10 -0.1
214,470 - CA264_00985 0.11 +0.9
214,478 + CA264_00985 0.11 -0.8
214,479 - CA264_00985 0.11 -0.4
214,563 + CA264_00985 0.19 -0.5
214,563 + CA264_00985 0.19 +0.2
214,563 + CA264_00985 0.19 +0.3
214,600 + CA264_00985 0.22 -0.1
214,600 + CA264_00985 0.22 -0.3
214,636 - CA264_00985 0.25 +0.1
214,644 + CA264_00985 0.26 +1.0
214,666 - CA264_00985 0.28 -1.6
214,701 + CA264_00985 0.31 -0.0
214,702 - CA264_00985 0.31 +0.1
214,702 - CA264_00985 0.31 +1.5
214,734 - CA264_00985 0.34 +0.6
214,734 - CA264_00985 0.34 -0.4
214,741 - CA264_00985 0.35 +0.5
214,743 + CA264_00985 0.35 -1.2
214,743 + CA264_00985 0.35 -0.4
214,744 - CA264_00985 0.35 -0.5
214,925 + CA264_00985 0.51 -1.1
214,938 - CA264_00985 0.52 -0.3
214,938 - CA264_00985 0.52 -0.3
214,938 - CA264_00985 0.52 -0.8
214,942 - CA264_00985 0.53 +0.0
214,943 - CA264_00985 0.53 -0.4
214,947 + CA264_00985 0.53 -1.4
215,005 - CA264_00985 0.58 +0.0
215,005 - CA264_00985 0.58 +0.0
215,047 + CA264_00985 0.62 +0.6
215,048 - CA264_00985 0.62 +2.5
215,052 + CA264_00985 0.63 -0.3
215,052 + CA264_00985 0.63 +0.0
215,065 + CA264_00985 0.64 +0.1
215,127 + CA264_00985 0.69 +0.3
215,128 - CA264_00985 0.69 -1.2
215,200 - CA264_00985 0.76 -0.3
215,289 + CA264_00985 0.84 -0.8
215,289 + CA264_00985 0.84 -0.1
215,289 + CA264_00985 0.84 -0.5
215,290 - CA264_00985 0.84 -0.8
215,290 - CA264_00985 0.84 -1.1
215,375 - -1.1
215,394 + -0.2
215,394 + +0.4
215,421 - -0.5
215,468 - -0.2
215,470 - +0.1
215,537 - +0.7
215,554 + -0.4
215,558 + -0.1
215,559 - -0.1
215,559 - -0.8
215,559 - +0.0
215,564 + -0.8
215,565 - -0.4
215,565 - +0.2
215,570 + +1.2
215,576 + -1.5
215,577 - +0.0
215,577 - +0.2
215,582 + -0.8
215,583 + -0.1
215,583 - -0.3
215,583 - -0.7
215,585 + +0.4
215,585 + -0.6
215,586 - +0.4
215,594 - -0.4
215,673 - -0.4
215,710 + -0.4
215,713 + +1.0
215,746 + CA264_00990 0.12 -0.3
215,857 + CA264_00990 0.19 +1.5
215,905 - CA264_00990 0.23 +0.1
215,905 - CA264_00990 0.23 +1.2
215,923 + CA264_00990 0.24 -1.3
215,979 - CA264_00990 0.28 -0.4
215,979 - CA264_00990 0.28 -1.1
215,979 - CA264_00990 0.28 -0.7
215,980 + CA264_00990 0.28 -0.7
216,105 + CA264_00990 0.36 +1.2
216,186 - CA264_00990 0.42 -1.5
216,222 - CA264_00990 0.44 -0.3
216,273 + CA264_00990 0.48 -1.5
216,273 + CA264_00990 0.48 +0.2
216,273 + CA264_00990 0.48 +0.4
216,274 - CA264_00990 0.48 -1.1
216,277 - CA264_00990 0.48 -0.1
216,333 + CA264_00990 0.52 -0.3
216,336 + CA264_00990 0.52 +0.2
216,337 - CA264_00990 0.52 +0.4
216,337 - CA264_00990 0.52 -0.3
216,337 - CA264_00990 0.52 -0.0

Or see this region's nucleotide sequence