Strain Fitness in Bosea sp. OAE506 around ABIE41_RS24150

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS24145 and ABIE41_RS24150 are separated by 43 nucleotidesABIE41_RS24150 and ABIE41_RS24155 overlap by 4 nucleotidesABIE41_RS24155 and ABIE41_RS24160 are separated by 349 nucleotides ABIE41_RS24145: ABIE41_RS24145 - TRAP transporter substrate-binding protein, at 4,984,867 to 4,985,862 _RS24145 ABIE41_RS24150: ABIE41_RS24150 - TRAP transporter large permease subunit, at 4,985,906 to 4,987,189 _RS24150 ABIE41_RS24155: ABIE41_RS24155 - TRAP transporter small permease, at 4,987,186 to 4,987,731 _RS24155 ABIE41_RS24160: ABIE41_RS24160 - methyl-accepting chemotaxis protein, at 4,988,081 to 4,990,174 _RS24160 Position (kb) 4985 4986 4987 4988Strain fitness (log2 ratio) -2 -1 0 1at 4985.178 kb on - strand, within ABIE41_RS24145at 4985.323 kb on - strand, within ABIE41_RS24145at 4985.917 kb on - strandat 4985.917 kb on - strandat 4986.124 kb on - strand, within ABIE41_RS24150at 4986.124 kb on - strand, within ABIE41_RS24150at 4986.255 kb on + strand, within ABIE41_RS24150at 4986.259 kb on - strand, within ABIE41_RS24150at 4986.433 kb on + strand, within ABIE41_RS24150at 4986.434 kb on - strand, within ABIE41_RS24150at 4986.450 kb on + strand, within ABIE41_RS24150at 4986.451 kb on - strand, within ABIE41_RS24150at 4986.451 kb on - strand, within ABIE41_RS24150at 4986.621 kb on + strand, within ABIE41_RS24150at 4986.621 kb on + strand, within ABIE41_RS24150at 4986.621 kb on + strand, within ABIE41_RS24150at 4986.621 kb on + strand, within ABIE41_RS24150at 4986.621 kb on + strand, within ABIE41_RS24150at 4986.622 kb on - strand, within ABIE41_RS24150at 4986.622 kb on - strand, within ABIE41_RS24150at 4986.622 kb on - strand, within ABIE41_RS24150at 4986.622 kb on - strand, within ABIE41_RS24150at 4986.622 kb on - strand, within ABIE41_RS24150at 4986.622 kb on - strand, within ABIE41_RS24150at 4987.349 kb on + strand, within ABIE41_RS24155at 4987.349 kb on + strand, within ABIE41_RS24155at 4987.349 kb on + strand, within ABIE41_RS24155at 4987.350 kb on - strand, within ABIE41_RS24155at 4987.350 kb on - strand, within ABIE41_RS24155at 4987.351 kb on + strand, within ABIE41_RS24155at 4987.366 kb on + strand, within ABIE41_RS24155at 4987.367 kb on - strand, within ABIE41_RS24155at 4987.367 kb on - strand, within ABIE41_RS24155at 4987.631 kb on + strand, within ABIE41_RS24155at 4987.631 kb on + strand, within ABIE41_RS24155at 4987.631 kb on + strand, within ABIE41_RS24155at 4987.632 kb on - strand, within ABIE41_RS24155

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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4,985,178 - ABIE41_RS24145 0.31 +1.2
4,985,323 - ABIE41_RS24145 0.46 +0.2
4,985,917 - -0.4
4,985,917 - +0.4
4,986,124 - ABIE41_RS24150 0.17 -1.4
4,986,124 - ABIE41_RS24150 0.17 +0.1
4,986,255 + ABIE41_RS24150 0.27 +0.3
4,986,259 - ABIE41_RS24150 0.27 -0.0
4,986,433 + ABIE41_RS24150 0.41 -2.5
4,986,434 - ABIE41_RS24150 0.41 -0.1
4,986,450 + ABIE41_RS24150 0.42 -1.4
4,986,451 - ABIE41_RS24150 0.42 +0.9
4,986,451 - ABIE41_RS24150 0.42 +0.8
4,986,621 + ABIE41_RS24150 0.56 -0.7
4,986,621 + ABIE41_RS24150 0.56 -0.5
4,986,621 + ABIE41_RS24150 0.56 +0.7
4,986,621 + ABIE41_RS24150 0.56 +0.9
4,986,621 + ABIE41_RS24150 0.56 +0.4
4,986,622 - ABIE41_RS24150 0.56 -0.1
4,986,622 - ABIE41_RS24150 0.56 -0.6
4,986,622 - ABIE41_RS24150 0.56 -1.7
4,986,622 - ABIE41_RS24150 0.56 -1.1
4,986,622 - ABIE41_RS24150 0.56 +0.2
4,986,622 - ABIE41_RS24150 0.56 +0.6
4,987,349 + ABIE41_RS24155 0.30 -0.9
4,987,349 + ABIE41_RS24155 0.30 +0.2
4,987,349 + ABIE41_RS24155 0.30 +0.3
4,987,350 - ABIE41_RS24155 0.30 +0.3
4,987,350 - ABIE41_RS24155 0.30 -0.9
4,987,351 + ABIE41_RS24155 0.30 +0.2
4,987,366 + ABIE41_RS24155 0.33 -0.1
4,987,367 - ABIE41_RS24155 0.33 -0.1
4,987,367 - ABIE41_RS24155 0.33 -0.2
4,987,631 + ABIE41_RS24155 0.82 -0.9
4,987,631 + ABIE41_RS24155 0.82 -1.6
4,987,631 + ABIE41_RS24155 0.82 -0.1
4,987,632 - ABIE41_RS24155 0.82 -0.3

Or see this region's nucleotide sequence