Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21455 and ABIE41_RS21460 are separated by 7 nucleotides ABIE41_RS21460 and ABIE41_RS21465 overlap by 4 nucleotides ABIE41_RS21465 and ABIE41_RS21470 are separated by 76 nucleotides
ABIE41_RS21455: ABIE41_RS21455 - heme lyase CcmF/NrfE family subunit, at 4,411,809 to 4,413,794
_RS21455
ABIE41_RS21460: ABIE41_RS21460 - cytochrome c maturation protein CcmE, at 4,413,802 to 4,414,332
_RS21460
ABIE41_RS21465: ABIE41_RS21465 - c-type cytochrome biogenesis protein CcmI, at 4,414,329 to 4,415,429
_RS21465
ABIE41_RS21470: ABIE41_RS21470 - sensor histidine kinase, at 4,415,506 to 4,416,876
_RS21470
Position (kb) 4414
4415
4416 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4414.542 kb on - strand, within ABIE41_RS21465 at 4414.542 kb on - strand, within ABIE41_RS21465 at 4414.931 kb on + strand, within ABIE41_RS21465 at 4414.931 kb on + strand, within ABIE41_RS21465 at 4414.932 kb on - strand, within ABIE41_RS21465 at 4414.933 kb on + strand, within ABIE41_RS21465 at 4414.934 kb on - strand, within ABIE41_RS21465 at 4414.934 kb on - strand, within ABIE41_RS21465 at 4414.934 kb on - strand, within ABIE41_RS21465 at 4414.934 kb on - strand, within ABIE41_RS21465 at 4415.087 kb on - strand, within ABIE41_RS21465 at 4415.440 kb on + strand at 4415.482 kb on + strand at 4415.483 kb on - strand at 4415.483 kb on - strand at 4415.536 kb on + strand at 4415.537 kb on - strand at 4415.537 kb on - strand at 4415.537 kb on - strand at 4415.537 kb on - strand at 4415.580 kb on - strand at 4415.580 kb on - strand at 4415.580 kb on - strand at 4415.990 kb on + strand, within ABIE41_RS21470 at 4415.991 kb on - strand, within ABIE41_RS21470 at 4415.993 kb on + strand, within ABIE41_RS21470 at 4415.993 kb on + strand, within ABIE41_RS21470 at 4415.994 kb on - strand, within ABIE41_RS21470 at 4415.994 kb on - strand, within ABIE41_RS21470 at 4415.994 kb on - strand, within ABIE41_RS21470 at 4415.994 kb on - strand, within ABIE41_RS21470 at 4415.994 kb on - strand, within ABIE41_RS21470 at 4416.206 kb on + strand, within ABIE41_RS21470 at 4416.207 kb on - strand, within ABIE41_RS21470
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,414,542 - ABIE41_RS21465 0.19 -1.4 4,414,542 - ABIE41_RS21465 0.19 +2.7 4,414,931 + ABIE41_RS21465 0.55 -1.8 4,414,931 + ABIE41_RS21465 0.55 -0.7 4,414,932 - ABIE41_RS21465 0.55 +1.3 4,414,933 + ABIE41_RS21465 0.55 +1.3 4,414,934 - ABIE41_RS21465 0.55 +1.4 4,414,934 - ABIE41_RS21465 0.55 +0.0 4,414,934 - ABIE41_RS21465 0.55 +3.2 4,414,934 - ABIE41_RS21465 0.55 +0.8 4,415,087 - ABIE41_RS21465 0.69 +0.2 4,415,440 + +0.0 4,415,482 + +1.1 4,415,483 - +0.2 4,415,483 - -0.2 4,415,536 + -0.5 4,415,537 - -0.2 4,415,537 - -1.4 4,415,537 - -0.8 4,415,537 - -0.7 4,415,580 - +1.3 4,415,580 - -0.5 4,415,580 - +2.0 4,415,990 + ABIE41_RS21470 0.35 +0.6 4,415,991 - ABIE41_RS21470 0.35 +0.8 4,415,993 + ABIE41_RS21470 0.36 +0.9 4,415,993 + ABIE41_RS21470 0.36 +0.2 4,415,994 - ABIE41_RS21470 0.36 -0.2 4,415,994 - ABIE41_RS21470 0.36 -1.9 4,415,994 - ABIE41_RS21470 0.36 +1.9 4,415,994 - ABIE41_RS21470 0.36 -0.5 4,415,994 - ABIE41_RS21470 0.36 -1.1 4,416,206 + ABIE41_RS21470 0.51 +0.6 4,416,207 - ABIE41_RS21470 0.51 -1.0
Or see this region's nucleotide sequence